rs246172640 SNP Detail

Summary

• ID
  rs246172640
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:91034694 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGCTGGCCTT GAACTCAGAG
  AGTGACTGCT GGGATTAAAG GCCACCATGC CCAGCTCCTC TTTGGACTTT AACTCTCAGG
  TTTGCCCACA GGAAGGGATG CTACAGCACT GGGAGCTGGG CCAGGCCCTG CGGCAACGCT
  ACCATGGCTT TCTGAACACC TCTTACCACA GGCAAGAGGT AAGGTTGGGA GTTTGATTGG
  Y
  AAAAGGACTG GGATCTTTGG ATTATATTCT GACTGCAGAG AATCTAAGGA TGAGCCTGGG
  CAGTCAAGGT TCCCTCTTGA ACTTTTGGTC CCTGGACAAG ACATCTAAGA GCTGTCTAGA
  ATACGGCTCT GGAGTCTGAA GTGTCTCTGC TTGTCTGGGA AAAGACAAAA CTGACCAGGG
  GTCCAACTTA GACATGAGGA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss354809632	MGP_WTSI_2_91044506	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs246172640					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss354809632	MGP_WTSI_2_91044506	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:91034694 () rs orientation: forward

Symbol	Name	Function Class
Acp2	acid phosphatase 2, lysosomal	within coordinates
Cpgi11901	CpG island 11901	1272 bp distal
Gm13783	predicted gene 13783	1571 bp upstream
Nr1h3	nuclear receptor subfamily 1, group H, member 3	1515 bp upstream
Rr367226	regulatory region 367226	1328 bp downstream
Rr560670	regulatory region 560670	1582 bp distal
Rr560671	regulatory region 560671	1427 bp distal
Rr560672	regulatory region 560672	1512 bp distal
Tssr18869	transcription start site region 18869	1551 bp downstream
Tssr18870	transcription start site region 18870	1415 bp downstream
Tssr18871	transcription start site region 18871	1082 bp downstream
Tssr18872	transcription start site region 18872	1463 bp upstream
Tssr18873	transcription start site region 18873	1676 bp upstream
Tssr25175	transcription start site region 25175	1655 bp upstream