rs246175311 SNP Detail

Summary

• ID
  rs246175311
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:35028778 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CGCTCTCCTG GAAACAATAA
  CCAAGAAAGG CTTCTTTGCT GTCCCCGCGC GGTTAAAAAA AAAAAAAGTA TCCTTTTCTC
  TCTACAGAAA CTCAAGAACA GGAATAGAAG TCCATCCTTC CAATATCCTC CCATGCCCTC
  ATGGCAGTCA GGTGACCTAA ATTGACGAGC CTTTTCTCTG CCCCAGGCCG GCCTATGCGC
  Y
  CCAAACTGCT CCCTTAGCTC TTCCTCCTTT GCATACCCTC TCTTAGCCTT GGATAACTTC
  TCAGTTTCCG TTCTTGCTGA AGGCGCCAGG CATCCTGTCT CCAGAGGAAA CCCCTTCAAG
  CCTTTAACCC TGATGCCGTG GGCTCTAGAA TTGCCTGGAC TGCAAACAGT GCAGAAACCA
  CCCTGCAGGA CTGTCCATTT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss377194229	MGP_WTSI_9_34925067	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs246175311					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss377194229	MGP_WTSI_9_34925067	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:35028778 () rs orientation: forward

Symbol	Name	Function Class
4930581F22Rik	RIKEN cDNA 4930581F22 gene	within coordinates
Cpgi21550	CpG island 21550	201 bp distal
Gm57537	predicted gene, 57537	within coordinates
Rr676432	regulatory region 676432	734 bp distal
Rr676433	regulatory region 676433	620 bp distal
Rr676434	regulatory region 676434	438 bp distal
Rr676435	regulatory region 676435	within coordinates
St3gal4	ST3 beta-galactoside alpha-2,3-sialyltransferase 4	618 bp upstream
Tssr84325	transcription start site region 84325	715 bp downstream
Tssr84326	transcription start site region 84326	536 bp downstream
Tssr88717	transcription start site region 88717	689 bp upstream
Tssr88718	transcription start site region 88718	591 bp upstream
Tssr88719	transcription start site region 88719	496 bp upstream
Tssr88720	transcription start site region 88720	212 bp downstream
Tssr88721	transcription start site region 88721	1653 bp downstream
Tssr88722	transcription start site region 88722	1708 bp downstream