rs246176438 SNP Detail

Summary

• ID
  rs246176438
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:63327213 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCTCTCTTTT CCCTGCCCAG
  AGCTGTAGGG ACGAACTTCA GACGAATGGT TTAATCCCTC TGAACCCTTA GACTGCACAA
  CAGGGACAGC GGCGTCCACC TAGTGGCAGT GCTAGGAAAT GAAGCGACAA AATCTAGCAG
  GGCTCAGTAC TGGGCAGTGG GAAGATGACA GCCCCAACCC ACCACAGCTA CCTCACTCCT
  W
  CAGTGAGACT CGTGGTACAG TGACCTGAAG TCAGTGCACT AGCCATTGTC ACCAATGTCT
  ATGACTGTTG ATCTGTTCTT TCTCTGACTT CATCTCTAAA CTTAGTTGGG GATGCTGAAC
  AAAAGCTTTC TAAGATGTCA CCCAACTGGA CTTGAAGATG ATACCAGAGG GAATACTACC
  CTGACCATTT TTTAGAGGGG                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss361735971	MGP_WTSI_4_63070010	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	T	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs246176438					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	T	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss361735971	MGP_WTSI_4_63070010	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:63327213 () rs orientation: forward

Symbol	Name	Function Class
Cpgi14370	CpG island 14370	897 bp proximal
Gm57078	predicted gene, 57078	within coordinates
Rr398307	regulatory region 398307	1140 bp upstream
Rr398308	regulatory region 398308	1661 bp upstream
Rr593544	regulatory region 593544	230 bp proximal
Rr593545	regulatory region 593545	1684 bp proximal
Tssr37559	transcription start site region 37559	629 bp upstream
Tssr42046	transcription start site region 42046	1017 bp downstream
Tssr42047	transcription start site region 42047	1034 bp downstream
Tssr42048	transcription start site region 42048	1212 bp downstream
Tssr42049	transcription start site region 42049	1238 bp downstream
Tssr42050	transcription start site region 42050	1707 bp downstream
Tssr42051	transcription start site region 42051	1729 bp downstream
Tssr42052	transcription start site region 42052	1769 bp downstream