rs246176819 SNP Detail

Summary

• ID
  rs246176819
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:13251732 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGGGACACTT GGATACCCCA
  CTGTAAATGA TCCTGACCTC AGCGCCAAGA ATACAGGCAG CACCCGGTGG GACCGGTTCT
  CTCTCTCTCT CTCCCTCTCT CTGTCTCTCT CTCAAGGCTA CATACGCAGC TCTGCCCTTT
  ACTTCATTTT CTCTAGGTTT TGAGACTACT GTAAGACAGA TGAGAAAACC TGAGGTTTGT
  R
  TTGCTTTCCC TCCTCCTTGC TTTGACCAAA CTCTGCTGAA CAAGGATTCT CTACCAAAGC
  CTTGGTGCCT CCATCTTTCT TTCTTTTATT TTGTATTTAT TTATTTATTT TATTCTTTTT
  ACTTTCTTTT ATTGGGGGGG GGCAGTGTCT CACTGTGTAG CTCTGGTTGG TCTGGAACTC
  ACTATGAACA CCAGGCTGGT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss322505063	CHEV_8_13201732	CHEVERUD	SCREENING_POP	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs246176819					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:13251732 () rs orientation: forward

Symbol	Name	Function Class
2810030D12Rik	RIKEN cDNA 2810030D12 gene	within coordinates
Cpgi20110	CpG island 20110	298 bp distal
Gm56825	predicted gene, 56825	within coordinates
Grtp1	GH regulated TBC protein 1	1037 bp upstream
Rr659873	regulatory region 659873	768 bp distal
Rr659874	regulatory region 659874	249 bp distal
Rr659875	regulatory region 659875	19 bp distal
Rr659876	regulatory region 659876	140 bp proximal
Rr659877	regulatory region 659877	491 bp proximal
Rr659878	regulatory region 659878	1992 bp proximal
Tssr76386	transcription start site region 76386	945 bp downstream
Tssr76387	transcription start site region 76387	761 bp downstream
Tssr80428	transcription start site region 80428	1096 bp upstream
Tssr80429	transcription start site region 80429	304 bp upstream