rs246176944 SNP Detail

Summary

• ID
  rs246176944
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:60177332 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACACACACAC GCCCCACACA
  CAGACAGACA GATACAGTTA TAGACATACA TAGGACACAC ACATGAATGT ACACACAGAG
  ACACATGCAT AGTTGTCATC TCTACACTGT CCTTCATAAG TAATCCACCC ATGGGGGAAA
  TCTGATAAAT CTGTCGATGT AGACATTGCT TTTGTTGGGC TGAGTCTTAG GTGCTACTGG
  M
  TGTATCTTCT TCCTGTTTTT CTTTTTTTGG CATCGTTATC GTCTTTCTCC TCAGGGATAA
  ACCCTGATTC TACAAAGCTT TAAATGAAAA CCTGCCAAGT TCTCCTTAGG TCAACTGCCG
  CTGCACTGGC TCAAGCAAAC TTCAAATCGC TGTGGGGCTT GTAGTCCCAC TGCCTTCCGA
  ACACTGCAGA CAGAAGAACA                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss324360204	CHEV_13_60130879	CHEVERUD	SCREENING_POP	f	SNP	A	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs246176944					SNP	A	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:60177332 () rs orientation: forward

Symbol	Name	Function Class
A530065N20Rik	RIKEN cDNA A530046M15 gene	193 bp upstream
Rr284562	regulatory region 284562	within coordinates
Tssr120109	transcription start site region 120109	104 bp upstream
Tssr120110	transcription start site region 120110	155 bp upstream
Tssr120111	transcription start site region 120111	186 bp upstream