rs246193960 SNP Detail

Summary

• ID
  rs246193960
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:4876310 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGCTATTTCA TATTGTTGCT
  ATAACATGCC AGCTAGTCAT TGACACTGAA AAATAACTGG ACTTAGAGCA AGGTCATGCT
  GATCACATAC TCGCATATGT TCTGCATGAG GTTTGTTATC TTAAGAAATT CCACAAAACT
  TTATGTAGGA CCTATCAAAT CAAAGGTCAA TATGAACTGT TCTGTCTAAA ATGGCTTGAG
  Y
  TGGCGCTGAC CACTGGGCAG CACTTCTTGC ACCTGTGTAT GAGCTTGTGT GTGTGTGTGT
  TTCTTATAAG CTGACAGAGA AAGATATTCG TAGTCATAGC GTCAGCCTCT AAAATCTGAG
  CTACAGCCCT GATCGATCAG TCTTAGGGTG TACATTCAAT AATCCACCCC TGACTGACTG
  AGATTGGTGT TTGTGTAGTT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss348472824	MGP_WTSI_1_4796168	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs246193960					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss348472824	MGP_WTSI_1_4796168	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:4876310 () rs orientation: forward

Symbol	Name	Function Class
A930006A01Rik	RIKEN cDNA A930006A01 gene	1994 bp downstream
Cpgi9	CpG island 9	1354 bp proximal
Gm37988	predicted gene, 37988	1805 bp upstream
Gm70766	predicted gene, 70766	1177 bp downstream
Lypla1	lysophospholipase 1	1736 bp upstream
Rr407434	regulatory region 407434	1188 bp proximal
Rr407435	regulatory region 407435	1633 bp proximal
Tssr5801	transcription start site region 5801	1555 bp upstream
Tssr5802	transcription start site region 5802	1779 bp upstream
Tssr10888	transcription start site region 10888	1573 bp downstream
Tssr10889	transcription start site region 10889	1631 bp downstream