rs246194145 SNP Detail

Summary

• ID
  rs246194145
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:123302827 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTTAGTTAGA AAGCTGTGAT
  CATTACAGGC TGGGAAGGGT GCGGTTAGGG CAACACCGTG CAGGAGTCAG TAGGAACGAA
  TTCATTGGAG ACAATACTCG CATTTGAAGG ACCTAGAGGG GTTCGTGAAC CTCAGCTCGC
  TCACCCACTA TCTCATTTTA CTTAAAATAA TCACTACTGA ATTGAAAGAA CTAGTTCATC
  W
  TAAGGCTCAA GTAACCGCGG CGCGTTGCCC AAACATTTCA TTTACATTCT GGATGGTCTT
  CTGAGGGTGT CCTTAAGAAT GGTCTGTATT AGTCCTGAGC TGAGAAGTCC GAGATTAAGG
  GCCTTCCTTC TCTGGCCAGT AGATGGTAGC CTGCATCTTT CCGTGGGTTT TTCTTTTGTG
  CCTGTCTGCA CCTGTCAGGT                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320920407	CHEV_3_123212096	CHEVERUD	SCREENING_POP	f	SNP	A	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs246194145					SNP	A	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:123302827 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13780	CpG island 13780	220 bp distal
Gm9369	predicted pseudogene 9369	764 bp downstream
Rr584525	regulatory region 584525	304 bp distal
Rr584526	regulatory region 584526	within coordinates
Rr584527	regulatory region 584527	132 bp proximal
Rr584528	regulatory region 584528	1718 bp proximal
Snhg8	small nucleolar RNA host gene 8	842 bp upstream
Snora24	small nucleolar RNA, H/ACA box 24	1112 bp upstream
Tssr31551	transcription start site region 31551	610 bp downstream
Tssr31552	transcription start site region 31552	563 bp downstream
Tssr35502	transcription start site region 35502	837 bp upstream
Tssr35503	transcription start site region 35503	249 bp upstream