rs246198397 SNP Detail

Summary

• ID
  rs246198397
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:92473353 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGGTATATTT TTAAAAACTG
  TAGCAGATTT TTCAGGAGAA ACCTCAATTT CTAAAAATTA ATTTCTCTGT ATAGCTTGAG
  AATAATAATG GCTATTCTAT ATAGAATTCC TTATTTTAGT TGTCAAAGGT CAAATATATT
  ACATACATGT ATGTATATAT ATATTTATAT CCTTTATATA TGTATGTGTA TATATTTATA
  Y
  CCTTTATATC GTATACATAC ATACACACAT ATAAATATAT TATATAATAT TATATATCCT
  TTAATTTCAT AGTTCTGATT TCTAAGAGGC TTGGAATGGT GGTTTATTCC TGGAATCCCA
  GCATTCACGT GGACTGAAGT CAGCCTTGGC TACCTAGCAA GACTCTGTCT CAAAACAAAA
  CAAACACGAA ATTCTAGTCT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	LEWES/EiJ	MA/MyJ	MOLF/EiJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	QSi3/Ianm	QSi5/Ianm	RIIIS/J	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	ZALENDE/EiJ
ss365880982	MGP_WTSI_5_92754520	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	LEWES/EiJ	MA/MyJ	MOLF/EiJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	QSi3/Ianm	QSi5/Ianm	RIIIS/J	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	ZALENDE/EiJ
rs246198397					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss365880982	MGP_WTSI_5_92754520	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:92473353 () rs orientation: forward

Symbol	Name	Function Class
Cxcl9	C-X-C motif chemokine ligand 9	within coordinates
Rr614603	regulatory region 614603	1857 bp distal
Tssr1547	transcription start site region 1547	1308 bp downstream
Tssr47288	transcription start site region 47288	1715 bp downstream
Tssr47289	transcription start site region 47289	1705 bp downstream
Tssr47290	transcription start site region 47290	1690 bp downstream
Tssr47291	transcription start site region 47291	1648 bp downstream
Tssr47292	transcription start site region 47292	367 bp downstream
Tssr47293	transcription start site region 47293	1271 bp upstream
Tssr47294	transcription start site region 47294	1308 bp upstream
Tssr51867	transcription start site region 51867	1786 bp upstream
Tssr51868	transcription start site region 51868	1740 bp upstream
Tssr51869	transcription start site region 51869	1698 bp upstream
Tssr51870	transcription start site region 51870	1648 bp upstream
Tssr51871	transcription start site region 51871	1613 bp upstream
Tssr51872	transcription start site region 51872	360 bp upstream
Tssr51873	transcription start site region 51873	1296 bp downstream
Tssr51874	transcription start site region 51874	1321 bp downstream