rs246209749 SNP Detail

Summary

• ID
  rs246209749
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:110367230 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TAAGAGTTTA CTAGCTTATC
  AGCAGGCAGG AGGCCATTAA AACCACCTGG ATGGGCCTGG ATTCTCTGAG TTAGCTCCAG
  AAATGATCCA GGGAGCTGGC ATCCCGAGAC TCCTCGGAGC AGGAGCAGCA TAATGGAAAA
  CCAGGCCATG GAGGCTAAGA AACCGGTCAC TCTGTGGAAG TCTGTGGAAG CCAGCGGCGG
  Y
  AGACACCCAG TGCTAACTTT GGGAGCTGTG TTCCAGGAAG GAAGGCGTGG TCAGCAGGCT
  GCAGTGCTGG GAAGAGGTGA GCAAGGGTGC ACAGAAAGCT CCCGCTGGCC TTGGCAACTC
  AGAGGTCATT CCGGACTTTG AGGGGCTGGC ATAGAAACTA GACCGCAGAA GGCTGGGAAG
  CAAGGAAGTG TGTGTGTGTG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss322398775	CHEV_7_117911537	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs246209749					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:110367230 () rs orientation: forward

Symbol	Name	Function Class
Ampd3	adenosine monophosphate deaminase 3	183 bp upstream
B430319F04Rik	RIKEN cDNA B430319F04 gene	within coordinates
Cpgi19579	CpG island 19579	60 bp proximal
Rr653308	regulatory region 653308	within coordinates
Rr653309	regulatory region 653309	398 bp proximal
Rr653310	regulatory region 653310	899 bp proximal
Tssr68503	transcription start site region 68503	40 bp upstream
Tssr68504	transcription start site region 68504	83 bp upstream
Tssr68505	transcription start site region 68505	115 bp upstream
Tssr68506	transcription start site region 68506	146 bp upstream
Tssr68507	transcription start site region 68507	592 bp upstream
Tssr68508	transcription start site region 68508	807 bp upstream
Tssr74265	transcription start site region 74265	1278 bp downstream