rs246215938 SNP Detail

Summary

• ID
  rs246215938
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:123259633 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGGTTGTAGT GAGGAGAGTA
  AGGATGGGTT CATTAAAAGT GAATTATATA AATGCACAAA ATTTTCAAAC AAAAATAATT
  TTAAAAAGAG AAGTCAAATG TGTGGTTGTA AGATATATTT GTATTTAAAA TAAGGTTATC
  AATTTCAAAA TCAGATTGTG AGAAAGTCTA ATAGAAGTGC TCGTAATGAG TGCTAATATG
  Y
  CAAATTAATT TATTTAGTTT AATTTTCCTA CTCAAGGATA CATGTTTATT ACAATGTGTG
  ACTGCTGCTG AAGGTTCCTT TAGGGCTTTG TCTGGAAGAA ACATGGTCTA TATTGACAGA
  ATATCATGCA ATAAATGCAG TCCTGAGACA GAAAAATGTG AACATGAATT TTTAAATAAT
  TTCACTTTGA ACCTACTGAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss369922378	MGP_WTSI_6_123232692	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs246215938					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss369922378	MGP_WTSI_6_123232692	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:123259633 () rs orientation: forward

Symbol	Name	Function Class
Clec4e	C-type lectin domain family 4, member e	within coordinates
Tssr58808	transcription start site region 58808	56 bp upstream
Tssr58809	transcription start site region 58809	718 bp upstream
Tssr58810	transcription start site region 58810	744 bp upstream
Tssr58811	transcription start site region 58811	780 bp upstream
Tssr63019	transcription start site region 63019	1102 bp upstream
Tssr63020	transcription start site region 63020	170 bp upstream
Tssr63021	transcription start site region 63021	92 bp upstream
Tssr63022	transcription start site region 63022	53 bp upstream
Tssr63023	transcription start site region 63023	within coordinates
Tssr63024	transcription start site region 63024	71 bp downstream
Tssr63025	transcription start site region 63025	124 bp downstream
Tssr63026	transcription start site region 63026	135 bp downstream
Tssr63027	transcription start site region 63027	184 bp downstream
Tssr63028	transcription start site region 63028	197 bp downstream
Tssr63029	transcription start site region 63029	228 bp downstream
Tssr63030	transcription start site region 63030	258 bp downstream
Tssr63031	transcription start site region 63031	315 bp downstream
Tssr63032	transcription start site region 63032	339 bp downstream
Tssr63033	transcription start site region 63033	364 bp downstream
Tssr63034	transcription start site region 63034	383 bp downstream
Tssr63035	transcription start site region 63035	404 bp downstream
Tssr63036	transcription start site region 63036	458 bp downstream
Tssr63037	transcription start site region 63037	488 bp downstream
Tssr63038	transcription start site region 63038	525 bp downstream
Tssr63039	transcription start site region 63039	584 bp downstream
Tssr63040	transcription start site region 63040	642 bp downstream
Tssr63041	transcription start site region 63041	691 bp downstream
Tssr63042	transcription start site region 63042	716 bp downstream
Tssr63043	transcription start site region 63043	726 bp downstream
Tssr63044	transcription start site region 63044	748 bp downstream
Tssr63045	transcription start site region 63045	839 bp downstream
Tssr63046	transcription start site region 63046	858 bp downstream
Tssr63047	transcription start site region 63047	881 bp downstream
Tssr63048	transcription start site region 63048	909 bp downstream
Tssr63049	transcription start site region 63049	924 bp downstream
Tssr63050	transcription start site region 63050	948 bp downstream
Tssr63051	transcription start site region 63051	1000 bp downstream