rs246218825 SNP Detail

Summary

• ID
  rs246218825
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:84510999 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    AAGTCTACC TTGCCTTCAG ATTCATAATC
  GTTCACTCTA CTTTATAACT AACTGTGTGC GTACACACAA CTATTTCTTT TTCTCTTTGC
  AGGTGCTGCA AACCAGGAAG GGGAAGTGTG TGGTTTAAGT TGCATATCCC TTATCCTCTG
  S
  CTGCTGGAGG CTTGCTGAAG GCTGTATGCT GTTAATGCTA ATTGTGATAG GGGTTTTGGC
  CTCTGACTGA CTCCTACCTG TTAGCATTAA CAGGACACAA GGCCTGTTAC TAGCACTCAC
  ATGGAACAAA TGGCCACCGT GGGAGGATGA                                 
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss325261450	CHEV_16_84714356	CHEVERUD	SCREENING_POP	f	SNP	G	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs246218825					SNP	G	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:84510999 () rs orientation: forward

Symbol	Name	Function Class
Mir155	microRNA 155	29 bp upstream
Mir155hg	Mir155 host gene (non-protein coding)	within coordinates
Rr404941	regulatory region 404941	776 bp downstream
Rr518521	regulatory region 518521	464 bp distal
Rr518522	regulatory region 518522	within coordinates
Tssr139173	transcription start site region 139173	91 bp upstream
Tssr139174	transcription start site region 139174	874 bp upstream
Tssr139175	transcription start site region 139175	962 bp upstream
Tssr139176	transcription start site region 139176	1498 bp upstream