rs246220255 SNP Detail

Summary

• ID
  rs246220255
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:128656663 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGTTAAAACT TGAGAAGAGG
  TGAAGCAGCT GGGTGTGGTG GCTCATGCTT GTAATCCCTG AATTTAGGAG GTTGAGGCAT
  GAGAACTGTT TGACCTTTCT CCAAAACAAA CAAAAAGGCA AGAGGGTCTT CGAAATGACT
  AAGGTGGAAA AGGTATTTGT CACCATGCCT AAAGACCTGA GTTGGATCCC CAGGACCCAT
  S
  CAGTGGAAGG TGATAACCAA CTCCGGAAAG CTGTCTTTTG ACTTCCGTAC CTTCAGTTGT
  TAGTGTGTAT ACTCACACAA GTGGGGTTTT TACTCAGATC TTTACATTTC AACTAAATAT
  AAAGCAGTAA GTTTAGACTG TGAGACCTAT TTGAAGGATC GGAGGAATCG GGAGTATTTT
  AATTTACTTT CTTGAGGAAG                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss323536207	CHEV_10_128257850	CHEVERUD	SCREENING_POP	f	SNP	G	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs246220255					SNP	G	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:128656663 () rs orientation: forward

Symbol	Name	Function Class
Cpgi2421	CpG island 2421	660 bp proximal
Dnajc14	DnaJ heat shock protein family (Hsp40) member C14	1346 bp downstream
Ormdl2	ORM1-like 2 (S. cerevisiae)	within coordinates
Rr402366	regulatory region 402366	727 bp upstream
Rr441331	regulatory region 441331	235 bp proximal
Rr441332	regulatory region 441332	787 bp proximal
Rr441333	regulatory region 441333	1114 bp proximal
Rr441334	regulatory region 441334	1131 bp proximal
Rr441335	regulatory region 441335	1449 bp proximal
Sarnp	SAP domain containing ribonucleoprotein	970 bp upstream
Tssr96457	transcription start site region 96457	1120 bp downstream
Tssr96458	transcription start site region 96458	932 bp upstream
Tssr96459	transcription start site region 96459	951 bp upstream
Tssr96460	transcription start site region 96460	990 bp upstream
Tssr96461	transcription start site region 96461	1093 bp upstream
Tssr99967	transcription start site region 99967	782 bp downstream