rs246225628 SNP Detail

Summary

• ID
  rs246225628
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:121422800 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCCGCGAGTG TCCGCCGCGT
  ACAGCCCGCG GCTCCCGGGC CTTCTCGCGC CCCAGGCTAC TTCCGGCTTC GCCAGCCCGG
  GCCACGGAGC ACGTGACCGA GTGCGGGGCG CGCCTGCGCG TGCGTACTCC GCGGCGGCCG
  AGCTCGCTGG GCTGCAGTCT CCAGTGCGGG CGGGAGGAGC TAAGGGAGTG CGGGGCGGCC
  S
  GCGTGCGGCA AGGAGGTGAC GCCCACGGCC ACCCGTGGAC AGCGGGCTGG CCGCCGATCG
  CTTTCGCAGA GTAGATGGGG CGGGTTTGTG TTTCAACGTC GCTTGGCTGC TGCGTGAAGC
  AAGTATCCGT TCATGCCATC AGTACTCTTT AAGTCGCTTT CAGTTTCTGT TTTTGAAAAT
  GGTAACACTG GAGACTTGAA                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss323513551	CHEV_10_121023951	CHEVERUD	SCREENING_POP	f	SNP	G	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs246225628					SNP	G	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:121422800 () rs orientation: forward

Symbol	Name	Function Class
Cpgi2289	CpG island 2289	within coordinates
Rr402304	regulatory region 402304	722 bp downstream
Rr402305	regulatory region 402305	within coordinates
Rr440247	regulatory region 440247	119 bp distal
Rr440248	regulatory region 440248	within coordinates
Tbk1	TANK-binding kinase 1	108 bp upstream
Tssr96043	transcription start site region 96043	653 bp downstream
Tssr96044	transcription start site region 96044	632 bp downstream
Tssr99623	transcription start site region 99623	1012 bp upstream
Tssr99624	transcription start site region 99624	985 bp upstream
Tssr99625	transcription start site region 99625	925 bp upstream
Tssr99626	transcription start site region 99626	174 bp upstream
Tssr99627	transcription start site region 99627	92 bp upstream
Tssr99628	transcription start site region 99628	71 bp upstream
Tssr99629	transcription start site region 99629	43 bp upstream
Tssr99630	transcription start site region 99630	15 bp upstream
Xpot	exportin, tRNA (nuclear export receptor for tRNAs)	485 bp downstream