rs246226052 SNP Detail

Summary

• ID
  rs246226052
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:72027246 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GATAGTTCAG ATAGCAGAGC
  ACTTGCCTAA CATGTTGAAA CCCTCCCTGG GTTCTATGCT GAGCATTGCA TAACCCAGTG
  TGGGGAGGAG GGTTGAGAGG GTGCTCCAGA GAGGGAAGTA GGAAACTTTA AGGTTCAAGG
  TCATCCATGG GTATAGAGCA ATTTTGAGAT CCAGTCACAA AAAAAAGGTT GAGGTTTTTG
  K
  TTTTTTTTTT TTTTAATGAA TTAATTTGGC TCTGGAAATC TCCTGTTACA GTTAAAATAC
  TTAACACACC TTAAGTTATC ATTGACAATA CTGTGTAAAG TATTGTGTTT CTTGTTTAGT
  TTTTTTTTTT TTTTTCATCA TGCACCATGG GCTCCAAGCC CAAGAGAACT TCTTTGCCTC
  AGATAGTCAC ATAGTGTCAG                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	B10.RIII-H2 H2-T18/(71NS)SnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CBA/J	CE/J	DBA/1J	DBA/2J	KK/HlJ	LEWES/EiJ	LG/J	NON/ShiLtJ	NZO/HlLtJ	NZW/LacJ	PWK/PhJ	RF/J	RIIIS/J	SJL/J	SM/J	SPRET/EiJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss354433941	MGP_WTSI_2_72034959	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	T	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	B10.RIII-H2 H2-T18/(71NS)SnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CBA/J	CE/J	DBA/1J	DBA/2J	KK/HlJ	LEWES/EiJ	LG/J	NON/ShiLtJ	NZO/HlLtJ	NZW/LacJ	PWK/PhJ	RF/J	RIIIS/J	SJL/J	SM/J	SPRET/EiJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs246226052					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	T	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss354433941	MGP_WTSI_2_72034959	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:72027246 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Gm75163	predicted gene, 75163			within coordinates
Rapgef4	Rap guanine nucleotide exchange factor (GEF) 4			Intron
				Noncoding-Transcript-Variant
Rr558927	regulatory region 558927			45 bp distal
Rr558928	regulatory region 558928			134 bp proximal
Rr558929	regulatory region 558929			309 bp proximal