rs246226255 SNP Detail

Summary

• ID
  rs246226255
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:77791489 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGAAAGGACT GGTCCTCATG
  ATGGCGAGCC AGTCCTAACC ACTAAGGGAA CTCCAGTACC CTCGTCTGGC TTTTTTGAGA
  CCTGGCTCAT TTGAGCCTGA GCTCGTCTGA AACTTGTGGT AATCCTTTCC TTCAACATCG
  CTGACCAGGT CAATGAAGAA CAACCCTAGA GTTTGAGGAA GGAGCTCAGA TGCCACATCC
  S
  GGCATCTCCC TCTAGTTTGG ATAAACCAGG CAAGGCTGCC ACTTCTCTGG GTTTCCAATC
  TCTCTCCTGG TCAAATCCTT GGGGTTTCCT TCCCCAGCAC AATGCCTCAG GGGTCCAGGG
  AGATATATCA CCTGGATTGA TCCCTGTGTC CCCTCAATGC CTGGCCCTGG GCAGAGAAGG
  GACATGATAT GACAGGTGCT                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss394641357	MGP_WTSI_15_77737719	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	G	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	G	C	C	C	C	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs246226255					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	G	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	G	C	C	C	C	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss394641357	MGP_WTSI_15_77737719	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:77791489 () rs orientation: forward

Symbol	Name	Function Class
Cpgi7276	CpG island 7276	1667 bp distal
Gm62342	predicted gene, 62342	486 bp upstream
Rr243	regulatory region 243	1326 bp distal
Rr505143	regulatory region 505143	897 bp distal
Rr505144	regulatory region 505144	497 bp distal
Rr505145	regulatory region 505145	396 bp distal
Rr505146	regulatory region 505146	216 bp proximal
Tssr131883	transcription start site region 131883	1693 bp downstream
Tssr131884	transcription start site region 131884	1655 bp downstream
Tssr131885	transcription start site region 131885	1248 bp downstream
Tssr135141	transcription start site region 135141	1890 bp upstream