rs246230233 SNP Detail

Summary

• ID
  rs246230233
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:45924248 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCGCCTCCCG GAGTGACGTC
  TGTCGGCAAC CCCCCTCTTT CGGCCCCCCC GCGCCCCCTC CCCCCCGGCC GGCTCCCCGC
  GGCCCCGGAG GTTTCACTGC ACAACAAGAT GGCGGCGGCG GCGGCGAGCG GAGCTGGCGG
  GGTTGCCGTG GCCGGAGCAG GGGGAGCCGG GCCGGCCGGC CGCCTGCTGC CTCCGCCCGC
  Y
  GCGGGGCCCC CGGCAGCCCC CGCCGCAGTG CCCCCGGCCG CCGTCCCGGC GCGTCCCACA
  GCCCCGGCCT CCCGCGGGTC GATGGCCGCT CGCATCGGCT ACTACGAGAT CGACCGCACC
  ATCGGCAAGG GCAACTTCGC TGTGGTCAAG CGGGCCACGC ACCTCGTCAC CAAGGCCAAG
  GTAGTGGCGC TGGGGACCGC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/2J	FVB/NJ	JF1/MsJ	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZO/HlLtJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RIIIS/J	SJL/J	SPRET/EiJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss377446846	MGP_WTSI_9_45821033	EVA_MGPV3	EVA_MGPV3	f	SNP	T	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	T	C	C	C	C	C	T	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/2J	FVB/NJ	JF1/MsJ	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZO/HlLtJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RIIIS/J	SJL/J	SPRET/EiJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs246230233					SNP	T	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	T	C	C	C	C	C	T	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss377446846	MGP_WTSI_9_45821033	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:45924248 () rs orientation: forward

Symbol	Name	Function Class
Cpgi21700	CpG island 21700	within coordinates
Pafah1b2	platelet-activating factor acetylhydrolase, isoform 1b, subunit 2	260 bp upstream
Rr401349	regulatory region 401349	147 bp downstream
Rr678026	regulatory region 678026	1621 bp distal
Rr678027	regulatory region 678027	120 bp distal
Rr678028	regulatory region 678028	170 bp distal
Rr678029	regulatory region 678029	1609 bp proximal
Sik3	SIK family kinase 3	within coordinates
Tssr84822	transcription start site region 84822	129 bp downstream
Tssr84823	transcription start site region 84823	90 bp downstream
Tssr89308	transcription start site region 89308	257 bp upstream