rs246235344 SNP Detail

Summary

• ID
  rs246235344
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:88362336 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GATGGTCACC AGATGGTTCT
  GAGGAAACAG GCACTTTCTG GGTTAGCCAT GCTTACCACA CCCTTCCTGA GGGCCAATAG
  GAGAGCCCCA GGGGGCAGAA GTTCCTCTCT GGAAGGGCCC TCAGAGTCTC ACTTCCATCC
  ATCCCCAGCC TTGAAGGTGC CTCCTGCTGC CCTCTGCATA GGGTGCTGCT GTGGCCCACG
  M
  TGTGCCTCTG GTCACCTAAC CATTAAAAAA ACTACCTTGC CATTTCTCAC CTGACTCACA
  GAAAAATTCC TTTCCACTTT GCCCCCTCAG CATCTCCTGG CCCCGTGCTC CAGAGCTCTG
  ATCATCTCTG GCCCTGGGCA AAGGTCTTCT AGGGAACTAG TTCCTGTATG CAAAAGGTAG
  ATTTCCCCAG GCTGGCCTGT                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss358796235	MGP_WTSI_3_88258951	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	A	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs246235344					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	A	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss358796235	MGP_WTSI_3_88258951	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:88362336 () rs orientation: forward

Symbol	Name	Function Class
Rr367457	regulatory region 367457	1478 bp downstream
Rr579761	regulatory region 579761	568 bp distal
Rr579762	regulatory region 579762	658 bp proximal
Sema4a	sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4A	within coordinates
Tssr932	transcription start site region 932	142 bp upstream
Tssr29951	transcription start site region 29951	61 bp downstream
Tssr34018	transcription start site region 34018	1628 bp upstream
Tssr34019	transcription start site region 34019	1617 bp upstream
Tssr34020	transcription start site region 34020	1603 bp upstream
Tssr34021	transcription start site region 34021	1550 bp upstream
Tssr34022	transcription start site region 34022	198 bp upstream
Tssr34023	transcription start site region 34023	176 bp upstream
Tssr34024	transcription start site region 34024	113 bp downstream
Tssr34025	transcription start site region 34025	144 bp downstream
Tssr34026	transcription start site region 34026	273 bp downstream
Tssr34027	transcription start site region 34027	301 bp downstream
Tssr34028	transcription start site region 34028	663 bp downstream
Tssr34029	transcription start site region 34029	697 bp downstream
Tssr34030	transcription start site region 34030	706 bp downstream
Tssr34031	transcription start site region 34031	1368 bp downstream