rs246237880 SNP Detail

Summary

• ID
  rs246237880
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr18:46344715 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGAGTGGGGT GTGGGATTAG
  AGTTTTAAGG GCTCATACCA GAGAGGCACA ATCCTCCTTT CTGATGACCA CGTAGAGTCT
  GGTTCCCCCC CCCCCCGCCT TTTTCCCTTC CCTCTAAGTT CCAGGTACAG TGAACAAACG
  TAGCCGCAGT TAAGCACCGT TTCTTCCAAC CCAGACCAGC AGAGCCCTCT CAGTATTTCC
  Y
  GACACACCTC GCCTGAACAC CACTCAGAGG CGTCTCTGGG CAGTTTCTCA GACGCCCCCT
  GAGGTCCAGC TTCTTGAAAG CTTTTCCACT TAGGCGAAGC CATCCAGCTA ACGCTCTGAA
  CCACTCCCAG CTTGTGTCCC AAAGATTTCA GGAGAAGTCT GGGGCTGGCA TCTCGCCAGT
  CCACAGCTCC CTCTACCCTG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss325609387	CHEV_18_46371302	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs246237880					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr18:46344715 () rs orientation: forward

Symbol	Name	Function Class
Rr537293	regulatory region 537293	1660 bp distal
Rr537294	regulatory region 537294	within coordinates
Rr537295	regulatory region 537295	949 bp proximal
Trim36	tripartite motif-containing 36	Intron
Tssr153216	transcription start site region 153216	803 bp downstream
Tssr153217	transcription start site region 153217	921 bp downstream
Tssr153218	transcription start site region 153218	947 bp downstream
Tssr153219	transcription start site region 153219	1165 bp downstream