rs246245139 SNP Detail

Summary

• ID
  rs246245139
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:51741414 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGATTTGGGG TAGGTGGAGG
  GTAAAATGGT GTGCTGCCCT TGAGTGTGAG ATTCTCCTGT TTCTGCCACC CAAGTGCTGG
  GATTGCAAAT GGACTTCAGC TTGCTCAGTT CATGATGATC TTCATGAAAG TCTATGTATG
  GCTGCTCGGT ACTTTCTGCA CTGGGGAGGC TGAGCCAGAA TTATTGCTGA GAGTCTGAAC
  S
  CTGAGTCATG TGAAGAATTC TAGGCTAGAC TAAAGTACAC AGTGAGACCT TGTTTTGTTG
  TTGTTTGGTT TGATTTGGTT AAAAAAACAA TGCCTATATT TTTGATCAGC TTAGTTTTTA
  GGGCACTACT TTGTTTTCTA TCCTTACAAG TAATATTTGA ACCAATATGC TTACTCAGCT
  GGACTTGTCG TATTTAATTT                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss324037234	CHEV_12_52795618	CHEVERUD	SCREENING_POP	f	SNP	G	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs246245139					SNP	G	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:51741414 () rs orientation: forward

Symbol	Name	Function Class
Ap4s1	adaptor-related protein complex AP-4, sigma 1	within coordinates
Rr256575	regulatory region 256575	787 bp proximal
Rr265419	regulatory region 265419	1413 bp distal
Tssr113422	transcription start site region 113422	1985 bp downstream