rs246254436 SNP Detail

Summary

• ID
  rs246254436
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr18:82604301 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCCCCCCATT TGTCCTTTGT
  TTCTCTTGCC ATTGATTTTG GTTATGAGAC TTCTTTTTCT AAAGGATTAC CCGAAATCTC
  TTCTCCTGTT GGTTTTGAGA GCGCTCCTGG CCCCTTTCTG AGTTTCCAAG GCAGGCTATG
  GAAAACCATC AGATTTGTGA GCTGTGGGAG GAAGGCTTGC CATGGGCCAA CATTACAGTC
  Y
  TTCTCTGGGG CATGTTGTTC CAGCACAGGG AACCAGTGCA GGTTCCTGGG GTCCACTGAC
  TGACGGGAAA CCTTACCTCC AGGGCTCAGG GGCTCACGTC TATAATTCTA GCACTCACAA
  GGTGGGGGCG GGAGATTGCA TGAATTTGAG GCCAGCCAAA GTTATGTAAT GAGTTCTAAG
  CAAGAGACGC TGTCTCAAAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss401436770	MGP_WTSI_18_82755568	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs246254436					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss401436770	MGP_WTSI_18_82755568	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr18:82604301 () rs orientation: forward

Symbol	Name	Function Class
D18Nds1	DNA segment, Chr 18, Nuffield Department of Surgery 1	284 bp proximal
Gm58829	predicted gene, 58829	538 bp upstream
Mbp	myelin basic protein	539 bp downstream
Tssr152153	transcription start site region 152153	1927 bp downstream
Tssr152154	transcription start site region 152154	1904 bp downstream
Tssr152155	transcription start site region 152155	1868 bp downstream
Tssr152156	transcription start site region 152156	1799 bp downstream
Tssr152157	transcription start site region 152157	1721 bp downstream
Tssr152158	transcription start site region 152158	1684 bp downstream
Tssr152159	transcription start site region 152159	1660 bp downstream
Tssr152160	transcription start site region 152160	1614 bp downstream
Tssr152161	transcription start site region 152161	1598 bp downstream
Tssr152162	transcription start site region 152162	1577 bp downstream
Tssr152163	transcription start site region 152163	1560 bp downstream
Tssr152164	transcription start site region 152164	1515 bp downstream
Tssr152165	transcription start site region 152165	1442 bp downstream
Tssr152166	transcription start site region 152166	1406 bp downstream
Tssr152167	transcription start site region 152167	1374 bp downstream
Tssr152168	transcription start site region 152168	1345 bp downstream
Tssr152169	transcription start site region 152169	1292 bp downstream
Tssr152170	transcription start site region 152170	1184 bp downstream
Tssr152171	transcription start site region 152171	1140 bp downstream
Tssr152172	transcription start site region 152172	1037 bp downstream
Tssr152173	transcription start site region 152173	1022 bp downstream
Tssr152174	transcription start site region 152174	988 bp downstream
Tssr152175	transcription start site region 152175	953 bp downstream
Tssr152176	transcription start site region 152176	764 bp downstream
Tssr152177	transcription start site region 152177	584 bp downstream
Tssr154083	transcription start site region 154083	1946 bp upstream
Tssr154084	transcription start site region 154084	1892 bp upstream
Tssr154085	transcription start site region 154085	1635 bp upstream
Tssr154086	transcription start site region 154086	1089 bp upstream
Tssr154087	transcription start site region 154087	868 bp upstream
Tssr154088	transcription start site region 154088	839 bp upstream
Tssr154089	transcription start site region 154089	721 bp upstream
Tssr154090	transcription start site region 154090	661 bp upstream