rs246254602 SNP Detail

Summary

• ID
  rs246254602
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:49675725 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAAGGAGTTC CTCGGGGGCC
  AGGACCTGGT CACAGCGCCC TCTCTCCGCC CAGCCCTGCG GCTCCAGGGC TGCGCGCCTT
  GGGAGGGAAG ATGGTGAAAG CAGAAGCAGC GCCTACACCG GGAGAGCAGG GAGGAGGAGT
  TGGACTGAGG TTGGGCGGCT CCGAGGTCCA GGGCGAGCTT GGCCAGAGGG AGTAGAGAGC
  M
  GCGGGGCTGC GCAGGGACGC GTGCCGTGAG TTCCGGTGAG CGTGTGTGTC CCATGCTCCC
  GTCTTTCAGG CCGGCCCAGG ACACGAAGCC GGAAGAGAGC TGGCTGGAGG GACGGGGGCC
  GTGAGCAGAG AGTGCAACCC GCGCAGCCCC GGGGACAGGC TGATTCTTGG CGCTCTCCGC
  CGGAGCCTGC CCAGGGCTGG                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss396238740	MGP_WTSI_16_49855475	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	C	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs246254602					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	C	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss396238740	MGP_WTSI_16_49855475	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:49675725 () rs orientation: forward

Symbol	Name	Function Class
Cd47	CD47 antigen (Rh-related antigen, integrin-associated signal transducer)	within coordinates
Cpgi8307	CpG island 8307	within coordinates
Gm4633	predicted gene 4633	316 bp upstream
Gm56621	predicted gene, 56621	63 bp downstream
Gm60685	predicted gene, 60685	875 bp upstream
Rr370104	regulatory region 370104	682 bp upstream
Rr516740	regulatory region 516740	1913 bp distal
Rr516741	regulatory region 516741	854 bp distal
Rr516742	regulatory region 516742	within coordinates
Rr516743	regulatory region 516743	15 bp proximal
Rr516744	regulatory region 516744	129 bp proximal
Rr516745	regulatory region 516745	799 bp proximal
Tssr4899	transcription start site region 4899	246 bp downstream
Tssr4900	transcription start site region 4900	96 bp downstream
Tssr4901	transcription start site region 4901	8 bp upstream
Tssr4902	transcription start site region 4902	123 bp upstream
Tssr4903	transcription start site region 4903	405 bp upstream
Tssr138724	transcription start site region 138724	1003 bp downstream
Tssr138725	transcription start site region 138725	818 bp downstream
Tssr138726	transcription start site region 138726	262 bp downstream
Tssr138727	transcription start site region 138727	232 bp downstream
Tssr138728	transcription start site region 138728	2 bp downstream
Tssr138729	transcription start site region 138729	262 bp upstream
Tssr138730	transcription start site region 138730	383 bp upstream
Tssr138731	transcription start site region 138731	710 bp upstream
Tssr138732	transcription start site region 138732	856 bp upstream
Tssr138733	transcription start site region 138733	944 bp upstream
Tssr138734	transcription start site region 138734	1196 bp upstream
Tssr138735	transcription start site region 138735	1234 bp upstream
Tssr141348	transcription start site region 141348	50 bp upstream
Tssr141349	transcription start site region 141349	155 bp downstream
Tssr141350	transcription start site region 141350	470 bp downstream
Tssr141351	transcription start site region 141351	754 bp downstream
Tssr141352	transcription start site region 141352	985 bp downstream