rs246270035 SNP Detail

Summary

• ID
  rs246270035
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:134731229 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAGTTGAAAG CAGGAAAAAC
  AAAACAAAAC AAAACAAAAC AACTCCACAA AGGTGTTTGA GGAGATGGCT CAGTTGATAG
  ATTGCTTGCT GTTCTGAATT TGGTCCCCAG AACCCATGTA CAAAGCAAAA GAGCAGGGTT
  TGGTGGTGAG TGCTTATAAT CTCAGCACTT GCGGGAAGGG GCAGACCAGG CAGAACCCTG
  Y
  GGTTCTGCTA GGTGAGTTCT AGGTAAGGGG GAGACTATAC CTCAAACGAG AGAGAGAGAG
  AGAGAGAGAG AGAGAGAGAG AGAGAGAGAG AGAGAGAGAG AGAGAGAGAG AGCACACAAG
  AGGTAACACT CAAAGTTGTT CTCTGGTTTC TGCACACACA CGTGTATGGA CTTGAACACA
  CACCAACGCA TACAAACCTA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss366817548	MGP_WTSI_5_135178245	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs246270035					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss366817548	MGP_WTSI_5_135178245	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:134731229 () rs orientation: forward

Symbol	Name	Function Class
Eln	elastin	218 bp downstream
Rr110186	regulatory region 110186	1572 bp proximal
Rr116608	regulatory region 116608	1629 bp distal
Rr131008	regulatory region 131008	1715 bp proximal
Rr399407	regulatory region 399407	1783 bp upstream
Tssr49100	transcription start site region 49100	690 bp upstream
Tssr49101	transcription start site region 49101	1179 bp upstream
Tssr53672	transcription start site region 53672	640 bp downstream
Tssr53673	transcription start site region 53673	687 bp downstream
Tssr53674	transcription start site region 53674	779 bp downstream
Tssr53675	transcription start site region 53675	807 bp downstream
Tssr53676	transcription start site region 53676	861 bp downstream
Tssr53677	transcription start site region 53677	962 bp downstream
Tssr53678	transcription start site region 53678	993 bp downstream
Tssr53679	transcription start site region 53679	1013 bp downstream
Tssr53680	transcription start site region 53680	1046 bp downstream
Tssr53681	transcription start site region 53681	1141 bp downstream
Tssr53682	transcription start site region 53682	1189 bp downstream
Tssr53683	transcription start site region 53683	1437 bp downstream