rs246271603 SNP Detail

Summary

• ID
  rs246271603
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:28449844 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTCTGACTGA TGGCTCTCCG
  GATGAGACCC TTGTTGTATG GGGAGAGGGT CTGCAACACC CAGAAGTTCT GTCAACAGGC
  TGCACCTGGG CCCAGGGCTC CCAGCCACAC CCTGCTCTGA CCATTATCCT AGGCCCCATT
  GGCTCCCTCC CTTAACCTTG GGGTCAGACC CCTCCACACC AGAGGGCCCC AGACCTGCAG
  R
  GAGACACTGG CAGCTCCAGC AGATTCCCCA AAGATGGTGA TGTTATCAGG GTCCCCCCCA
  AAGGCTGCAA TGTTCCTCTT CACCCAGGCG ATAGCCATGT GCTGATCTCG AAGACCAAAG
  TTACCTGAGG GTGAGGGGAG AGCCTTCATC AGGAGGGCCC CCAACTAAAG CTGGAGGAGG
  TTAGAGATTG GTGACCTAGA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss353478955	MGP_WTSI_2_28415352	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs246271603					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss353478955	MGP_WTSI_2_28415352	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:28449844 () rs orientation: forward

Symbol	Name	Function Class
Cel	carboxyl ester lipase	within coordinates
Rr553836	regulatory region 553836	934 bp proximal
Tssr16960	transcription start site region 16960	1900 bp downstream
Tssr16961	transcription start site region 16961	1815 bp downstream
Tssr16962	transcription start site region 16962	1779 bp downstream
Tssr16963	transcription start site region 16963	722 bp upstream
Tssr16964	transcription start site region 16964	1116 bp upstream
Tssr23256	transcription start site region 23256	1840 bp upstream
Tssr23257	transcription start site region 23257	1810 bp upstream
Tssr23258	transcription start site region 23258	1778 bp upstream
Tssr23259	transcription start site region 23259	1760 bp upstream
Tssr23260	transcription start site region 23260	1750 bp upstream
Tssr23261	transcription start site region 23261	1709 bp upstream
Tssr23262	transcription start site region 23262	437 bp upstream
Tssr23263	transcription start site region 23263	395 bp upstream
Tssr23264	transcription start site region 23264	193 bp upstream
Tssr23265	transcription start site region 23265	151 bp upstream
Tssr23266	transcription start site region 23266	21 bp downstream
Tssr23267	transcription start site region 23267	47 bp downstream
Tssr23268	transcription start site region 23268	689 bp downstream
Tssr23269	transcription start site region 23269	755 bp downstream
Tssr23270	transcription start site region 23270	826 bp downstream
Tssr23271	transcription start site region 23271	1348 bp downstream
Tssr23272	transcription start site region 23272	1372 bp downstream
Tssr23273	transcription start site region 23273	1402 bp downstream
Tssr23274	transcription start site region 23274	1432 bp downstream
Tssr23275	transcription start site region 23275	1496 bp downstream