rs246273895 SNP Detail

Summary

• ID
  rs246273895
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:180830125 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGCCCCAATT AAAGCAAATG
  CCGACCCAGT GACCTATGCT CTCCTTACAG CTCGGCAGAA TCCCCCCAGG TCTCCAGAAG
  CCCGATGACC TGTGGCCTGA CTCCTGAAAC CATGAAGCAG CAGCCAGTCA TCCATTCTGG
  CCAGACCAAC CCCAGGGACC TTTCCTGACC TATCAGAATC TGCAGCCTGC CCAAGCTGAA
  R
  TGGTGCTAGG CCAGTGCCTA CCCTCTCGAC CCTCCCTGTA AACTAGGAAG GCTGAACAAG
  AGAAACCAGT AGAAGCTGGA GAGAGCCCCC TCTTGGTTCA CAGCACTGAA CTTTCCTGAC
  CCCATAACTG TGTCTTGGCA CAAAGCAGAA AATAAACTCA CAGCAGCCAC CCTCCCCTGG
  TATGTTTGAA ACATTACTGA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss356774992	MGP_WTSI_2_180923037	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs246273895					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss356774992	MGP_WTSI_2_180923037	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:180830125 () rs orientation: forward

Symbol	Name	Function Class
C330003G01Rik	RIKEN cDNA C330003G01 gene	609 bp upstream
Cpgi12916	CpG island 12916	318 bp distal
Gm75115	predicted gene, 75115	619 bp upstream
Gm75119	predicted gene, 75119	802 bp upstream
Ppdpf	pancreatic progenitor cell differentiation and proliferation factor	within coordinates
Rr374383	regulatory region 374383	within coordinates
Rr572939	regulatory region 572939	986 bp distal
Rr572940	regulatory region 572940	1035 bp distal
Rr572941	regulatory region 572941	630 bp distal
Rr572942	regulatory region 572942	129 bp distal
Rr572943	regulatory region 572943	312 bp proximal
Rr572944	regulatory region 572944	813 bp proximal
Tssr22287	transcription start site region 22287	985 bp downstream
Tssr22288	transcription start site region 22288	913 bp downstream
Tssr22289	transcription start site region 22289	737 bp downstream
Tssr22290	transcription start site region 22290	714 bp downstream
Tssr22291	transcription start site region 22291	680 bp downstream
Tssr22292	transcription start site region 22292	524 bp downstream
Tssr22293	transcription start site region 22293	416 bp downstream