rs246279383 SNP Detail

Summary

• ID
  rs246279383
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr18:82601131 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CATGAGGTTG TAGGGTCTCA
  TGGGGACAAA GGTATCCAGC AGAGAGTGCT CGCTTCACAT CGCAGGTACA CGTTTAAATC
  AACCTGTTCC TGGTGAGCGC AGGTTTACCA GTTATGGGGC CTAACGCCCA CCAAAGACAG
  AGCAAGTGGC ACGAGAGACA AAAGGCATGA AAGAAAATGG AAGCAGTGGT GGGTGCCCAC
  Y
  TTGCTGGCTC TAGCCCTTGC TTCCCTCTGC TGGCCGACCT TGGGAAGATG ACTCAACTTC
  TCTGATCTTT GATTATCATA TAAAATAAGC CTGTACTCAA GGTTGGCTGT GAGTACAAGC
  AGGGCATCAG GTGGAAGGGC CTGTGCTCCA GGCGGGTGCT CCAGGTAGGT GCTCCAGGCA
  GGTGCTCCAG GCAGGTGCTC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss401436701	MGP_WTSI_18_82752398	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs246279383					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss401436701	MGP_WTSI_18_82752398	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr18:82601131 () rs orientation: forward

Symbol	Name	Function Class
Gm58829	predicted gene, 58829	1616 bp downstream
Mbp	myelin basic protein	within coordinates
Rr541827	regulatory region 541827	659 bp proximal
Tssr152152	transcription start site region 152152	1102 bp upstream
Tssr152153	transcription start site region 152153	1130 bp upstream
Tssr152154	transcription start site region 152154	1244 bp upstream
Tssr152155	transcription start site region 152155	1282 bp upstream
Tssr152156	transcription start site region 152156	1355 bp upstream
Tssr152157	transcription start site region 152157	1406 bp upstream
Tssr152158	transcription start site region 152158	1463 bp upstream
Tssr152159	transcription start site region 152159	1493 bp upstream
Tssr152160	transcription start site region 152160	1543 bp upstream
Tssr152161	transcription start site region 152161	1560 bp upstream
Tssr152162	transcription start site region 152162	1576 bp upstream
Tssr152163	transcription start site region 152163	1601 bp upstream
Tssr152164	transcription start site region 152164	1641 bp upstream
Tssr152165	transcription start site region 152165	1694 bp upstream
Tssr152166	transcription start site region 152166	1760 bp upstream
Tssr152167	transcription start site region 152167	1775 bp upstream
Tssr152168	transcription start site region 152168	1810 bp upstream
Tssr152169	transcription start site region 152169	1871 bp upstream
Tssr152170	transcription start site region 152170	1952 bp upstream
Tssr154083	transcription start site region 154083	1211 bp downstream
Tssr154084	transcription start site region 154084	1235 bp downstream
Tssr154085	transcription start site region 154085	1507 bp downstream