rs246285857 SNP Detail

Summary

• ID
  rs246285857
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:78377374 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTGCCTGGCA GCTCAGCAGC
  TATTTGGTGT CTTTGCTAGG CAGACAAGGA GACCAAGGAT CCCAGGACCA AGTCTACGGA
  ACTGGGGTTC CACCCCAGAC CTCCCTTCCC TGGAAGATCA ACTCCCCGCA GGTGCTTGGG
  TAGAAAGGGA GCCCTAACAG GTTCAGCCCA AGCAAGGGGC CTTCCACAGC CCCTTGTGAG
  S
  CCAACAGGAT CTGAAGCACT CTACGTGTTC ATTCAATAAG GCAGCAAGCC AGGTCGGACC
  CAGACATCTG AGCAGCCTCA TGATGGCGTG GGGTTGGGGT GAGGGAGGGC ATAACCCTGG
  GGGAGAGGAA GAGGAATGAA AGAGGCAAGA TTATAGCCGG GCCACAAGCC ACAGCCAAAA
  ACAGAGAATG CCTAAGAAAA                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss394655134	MGP_WTSI_15_78323604	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	G	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs246285857					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	G	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss394655134	MGP_WTSI_15_78323604	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:78377374 () rs orientation: forward

Symbol	Name	Function Class
Il2rb	interleukin 2 receptor, beta chain	within coordinates
Rr505292	regulatory region 505292	279 bp proximal
Rr505293	regulatory region 505293	572 bp proximal
Rr505294	regulatory region 505294	1612 bp proximal
Rr505295	regulatory region 505295	1681 bp proximal
Tssr131958	transcription start site region 131958	677 bp upstream
Tssr131959	transcription start site region 131959	695 bp upstream
Tssr135223	transcription start site region 135223	433 bp downstream
Tssr135224	transcription start site region 135224	552 bp downstream
Tssr135225	transcription start site region 135225	1184 bp downstream
Tssr135226	transcription start site region 135226	1198 bp downstream
Tssr135227	transcription start site region 135227	1863 bp downstream
Tssr135228	transcription start site region 135228	1885 bp downstream