rs246287373 SNP Detail

Summary

• ID
  rs246287373
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:44882792 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CATTATTTAA GACACACAGG
  CAATTAATTT TTCTGCTTGT AAAATGAACA TGAGTTTTAG AAACTTAAAA AATAAGACAA
  ATAATGAGGT ATAACTTTTT AAAAATAAGG GTGTCTTATG TCAACTCATG AAACAGTCCA
  ATAACCTGCA TGGTTCTAAA CTAGGGTTTT GTTACTTTAT AATCCTCTCC ATAAGCTTTG
  R
  CCGGAATCAA CTTGCAGATG TGGAAACTGA GCAGCTTAGG AAAGCCATCG CTCAACTTGT
  CTGAAGTGGC CACTGTGACC TCTGAATCCA TAGGTGTTAA CTCGCTTTTT TAGAACCTTC
  TAGACACCAT GACTAAGTTG CCCTGTTGCG ACTAACAGTG GAATGGTCGT GACTCGGGAG
  TGCTTGTTTT GGGAACCGAC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss388465221	MGP_WTSI_13_44824685	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	A	G	G	G	G	A	G	G	G	G	G	A	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs246287373					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	A	G	G	G	G	A	G	G	G	G	G	A	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss388465221	MGP_WTSI_13_44824685	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:44882792 () rs orientation: forward

Symbol	Name	Function Class
Cpgi5525	CpG island 5525	93 bp proximal
Gm60383	predicted gene, 60383	within coordinates
Jarid2	jumonji and AT-rich interaction domain containing 2	158 bp upstream
Rr369688	regulatory region 369688	1291 bp upstream
Rr403743	regulatory region 403743	1772 bp upstream
Rr478586	regulatory region 478586	within coordinates
Rr478587	regulatory region 478587	775 bp proximal
Rr478588	regulatory region 478588	1883 bp proximal
Tssr119535	transcription start site region 119535	206 bp upstream
Tssr119536	transcription start site region 119536	284 bp upstream
Tssr119537	transcription start site region 119537	323 bp upstream
Tssr119538	transcription start site region 119538	478 bp upstream
Tssr119539	transcription start site region 119539	1278 bp upstream
Tssr119540	transcription start site region 119540	1410 bp upstream
Tssr119541	transcription start site region 119541	1565 bp upstream
Tssr119542	transcription start site region 119542	1703 bp upstream
Tssr119543	transcription start site region 119543	1949 bp upstream
Tssr119544	transcription start site region 119544	1965 bp upstream