rs246298099 SNP Detail

Summary

• ID
  rs246298099
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr17:32385222 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACGGGATCCC GGCGGCCTGA
  AGAGGGATCG GGCGGCACGC GGGGGAGGGG GCGCGGGCTT CGCAAGGGCT CCAGCTCCTG
  CTTCTCGCGC TCCAGCGCCG GGTCTTGCAG CTCTCCAACA TGAGACGTTT TCTCCGAGTT
  CAGAGCTCCG AGAACTCCGC GCCCCCTCCT TGTCCCCCCC CCCCCTTCAC GGCCCGCCCG
  R
  GATAGGGGAG GCGCTTTTGT GCAAGGGGTC CTAGGCCTTG GGGGGTCCTT GAGCCCCCAT
  CCTAACCTTC CCAGGACTCC AGGCAGAAGT AGGATGGGGT GAGCCTGAAA CTTTTGGTAC
  ACCTCGCTTC CGAATTTCAG CCCCAGATTC CCACAACTCC AGCTCCTACT CTTGGACTCT
  TGATTCATTC AAGGGTCTCG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss325361633	CHEV_17_32303193	CHEVERUD	SCREENING_POP	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs246298099					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:32385222 () rs orientation: forward

Symbol	Name	Function Class
Notch3	notch 3	Intron
Rr370218	regulatory region 370218	1705 bp downstream
Rr525698	regulatory region 525698	1260 bp distal
Rr525699	regulatory region 525699	within coordinates
Rr525700	regulatory region 525700	594 bp proximal
Tssr147343	transcription start site region 147343	1233 bp upstream
Tssr147344	transcription start site region 147344	500 bp downstream
Tssr147345	transcription start site region 147345	631 bp downstream