rs246302054 SNP Detail

Summary

• ID
  rs246302054
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:19319719 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    TTTAAATTC ATAGGTAATT CATTTTAGAT
  TTACTGACAA GGTCATGTAT TTTCACATAA TAAAAGATAT TTGTTCTCAA GTCCTAAGAA
  AGTCTAGTTC CTGTAATATT AGGGTCCATG TCCTGTTCTT GCGACTGAGC GAATGAGCTG
  W
  CCAGAAACAA AGCCTCTCCG CATCCAACCT CTCACCTCCC ATGGCACCCA GCAAGTTACT
  TTTGATAAAG AGCCTCTCAC GAAACTCTCA ATCGAGAAGT TAGCAAATAT GTATTAAACT
  CTAGTTACGC AGCAGGCTCC ATGTTAATGA                                 
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320678292	CHEV_3_19165555	CHEVERUD	SCREENING_POP	f	SNP	T	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs246302054					SNP	T	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:19319719 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Pde7a	phosphodiesterase 7A			Intron
				Noncoding-Transcript-Variant
Rr573966	regulatory region 573966			1754 bp distal
Rr573967	regulatory region 573967			434 bp distal
Tssr32690	transcription start site region 32690			616 bp upstream
Tssr32691	transcription start site region 32691			581 bp upstream
Tssr32692	transcription start site region 32692			550 bp upstream
Tssr32693	transcription start site region 32693			532 bp upstream
Tssr32694	transcription start site region 32694			446 bp upstream