rs246310730 SNP Detail

Summary

• ID
  rs246310730
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:56260565 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGGCCCCTTG GGAACCTGCT
  TCTAAAGCAA CAGAACAAGT GTGGGGTGTG GGTAGTCTAG GGAGTTCTTC AGAATCCACA
  GTTCAAGGCC AGCCTAGGCT ATGTGAGACC CTCCAGAAGG AGGAAGAGGA GGAGGAAGAA
  GGAAGAGGAG GGAGATGGAG GAGAAGGAGA AAGGAGAGAA GGGAAATTAG AAAAAAAGAA
  R
  AAAAAAAAAA AAAAACCTCA GGCCAGGCAG TGGTGGCACA CGCCTTTAAT CCCAGCACTT
  AGGAGGCAGA GGCAGGTGGA TTTCTGAGTT CCAGGCCAGC CTGGTCTACA GAGTGAATTC
  CAGGACAGTC AGGGCTACAC AGAGAAACCC TGTCTCGAAA AACCAAAAAA AAAAAAAAAC
  AAAAAAACAA AAAAACCTCA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NON/ShiLtJ	NZB/BlNJ	NZW/LacJ	PL/J	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	ZALENDE/EiJ
ss398548959	MGP_WTSI_17_56092988	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NON/ShiLtJ	NZB/BlNJ	NZW/LacJ	PL/J	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	ZALENDE/EiJ
rs246310730					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss398548959	MGP_WTSI_17_56092988	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:56260565 () rs orientation: forward

Symbol	Name	Function Class
Ebi3	Epstein-Barr virus induced gene 3	within coordinates
Gm16712	predicted gene, 16712	1206 bp downstream
Rr340009	regulatory region 340009	364 bp distal
Tssr145247	transcription start site region 145247	866 bp downstream
Tssr145248	transcription start site region 145248	840 bp downstream
Tssr145249	transcription start site region 145249	826 bp downstream
Tssr145250	transcription start site region 145250	807 bp downstream
Tssr145251	transcription start site region 145251	783 bp downstream
Tssr145252	transcription start site region 145252	769 bp downstream
Tssr145253	transcription start site region 145253	751 bp downstream
Tssr145254	transcription start site region 145254	727 bp downstream
Tssr145255	transcription start site region 145255	703 bp downstream
Tssr145256	transcription start site region 145256	329 bp upstream
Tssr145257	transcription start site region 145257	753 bp upstream
Tssr145258	transcription start site region 145258	775 bp upstream