rs246314407 SNP Detail

Summary

• ID
  rs246314407
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:16359298 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCCTACCATC TTCCACAGTT
  TATGAGACCC CTTAGAACTT TAGGTTTCTC CAGGTGATGT GCTTTTGCTC CAATTTTCTT
  CTTTTTCCTC CTCCTCTGCA TCCTCTCCCT TTTCTACTTT CTCCTCTCTC TCTCTCTCTC
  TCTCTCTCTC TCTCTCTCTC TCTCTCTCTC TCTCTCTCTC TCTCTCTCTC TCCTGCTCCA
  Y
  CTTTCCTTTT ATCTGCCTAA TCATCAGCTC TTCTTTATTT TACAAATTAA GGTGGGAAGC
  AGGTTTACAG GAAGTCACCT GAGTGCTCAT TCCTTGTTCA CAACCACTCA AGGGAGAACA
  GAATTAATAT CAAATATAAT TAGTAGTCTA TCCACAACCG GTGTCAGCCA TTCAAAGTGC
  AGAAGGAAAA CTCAACATCG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss353207002	MGP_WTSI_2_16276114	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs246314407					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss353207002	MGP_WTSI_2_16276114	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:16359298 () rs orientation: forward

Symbol	Name	Function Class
Cpgi11224	CpG island 11224	1292 bp proximal
Plxdc2	plexin domain containing 2	1817 bp upstream
Rr372823	regulatory region 372823	1127 bp upstream
Rr552173	regulatory region 552173	1327 bp proximal
Rr552174	regulatory region 552174	1385 bp proximal
Rr552175	regulatory region 552175	1910 bp proximal
Tssr16298	transcription start site region 16298	1150 bp upstream
Tssr16299	transcription start site region 16299	1523 bp upstream
Tssr16300	transcription start site region 16300	1548 bp upstream
Tssr16301	transcription start site region 16301	1593 bp upstream
Tssr16302	transcription start site region 16302	1600 bp upstream
Tssr16303	transcription start site region 16303	1787 bp upstream
Tssr16304	transcription start site region 16304	1807 bp upstream
Tssr16305	transcription start site region 16305	1836 bp upstream
Tssr16306	transcription start site region 16306	1878 bp upstream
Tssr16307	transcription start site region 16307	1963 bp upstream