rs246316276 SNP Detail

Summary

• ID
  rs246316276
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:122522197 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CATGGGTAGC TAGTGTTAGG
  GTTCGTAAGT CAGCAGAATC GTGTAGAGGT AGTCTTAGCT TCAAAATTCA CAGGCCAAGG
  ACAGGTGGTT GTCATTTTTA TGTCCTATGT CTAACCGAAT CTTGCGCTTC CATAAGGAGG
  GTCTTTGGTG TATGAATCAA TGATTACAAC TGATGTTAGC CTTAAGCTCG GATGTGGTTT
  Y
  GATGGAAGCC ACTGTGTCCC GTACCTGCAG GTTTGTCATA GCGGTTTCTT CCTCATGTCT
  CTCCCTAGCT TGTAGGGTTG GAGTGCTTTC CGGAGTCACT GGGAGGGCTG CTGTGAGGGA
  GATAGGTTCT GGGTCCTCTC CACCAAGAGT TGCTTAAGGA GAAAAGTGAG GTGGGGCTGT
  CCCTGTACTA CTAAGAACGA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss359508353	MGP_WTSI_3_122431466	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs246316276					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss359508353	MGP_WTSI_3_122431466	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:122522197 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13771	CpG island 13771	244 bp proximal
Pde5a	phosphodiesterase 5A, cGMP-specific	625 bp upstream
Rr584392	regulatory region 584392	within coordinates
Rr584393	regulatory region 584393	374 bp proximal
Rr584394	regulatory region 584394	532 bp proximal
Rr584395	regulatory region 584395	1033 bp proximal
Rr584396	regulatory region 584396	1914 bp proximal
Tssr31509	transcription start site region 31509	396 bp upstream
Tssr31510	transcription start site region 31510	456 bp upstream
Tssr31511	transcription start site region 31511	571 bp upstream
Tssr31512	transcription start site region 31512	615 bp upstream
Tssr31513	transcription start site region 31513	650 bp upstream
Tssr31514	transcription start site region 31514	1161 bp upstream
Tssr31515	transcription start site region 31515	1302 bp upstream
Tssr31516	transcription start site region 31516	1322 bp upstream
Tssr31517	transcription start site region 31517	1370 bp upstream
Tssr31518	transcription start site region 31518	1499 bp upstream
Tssr31519	transcription start site region 31519	1565 bp upstream
Tssr31520	transcription start site region 31520	1588 bp upstream
Tssr31521	transcription start site region 31521	1668 bp upstream
Tssr31522	transcription start site region 31522	1704 bp upstream