rs246329586 SNP Detail

Summary

• ID
  rs246329586
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:54759170 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGCAATCTCG CTTTCCTGCT
  GGGCCAGGAA GGCGGCCGCT GGGTCCTCCT CGGCGGCCTC CGGGGCCCCG CTCTCCGACG
  ATGAGAAGAA GCCGAAGTCC TCAGCCATCT TCCCCGCGTG GCTGCTGTCA CCTCCCGCCC
  GCGCCCGCGG CCCGCACTTC CCGTCACCCG CCCGGCTTGC CTGTCACTGC GGCTGCAGCG
  S
  CGGCGGGAGG AGTCGCGGCG GGAATGCGGT GACGTCAGCG GCCGAGGGCG GGGCCCGCGG
  GGCTGGGTGG TCGCCCCGCC CTCGGTTCGA GCCCCCGAAG CCCACCTTCG GCTCCAGAGC
  GTGCCAGCAG CACTGGGCTG GCACCGGGTG CATTGAACCG AAAAGTTTCT CCCAGAGCTG
  ATTTTGTGAG CTGCGTGATA                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ
ss388670708	MGP_WTSI_13_54712718	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	C	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ
rs246329586					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	C	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss388670708	MGP_WTSI_13_54712718	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:54759170 () rs orientation: forward

Symbol	Name	Function Class
Cltb	clathrin light chain B	13 bp upstream
Cpgi5644	CpG island 5644	within coordinates
Rr388462	regulatory region 388462	1588 bp downstream
Rr480257	regulatory region 480257	1898 bp distal
Rr480259	regulatory region 480259	671 bp distal
Rr480260	regulatory region 480260	within coordinates
Rr480261	regulatory region 480261	1943 bp proximal
Tssr122620	transcription start site region 122620	60 bp upstream
Tssr122621	transcription start site region 122621	31 bp upstream
Tssr122622	transcription start site region 122622	within coordinates
Tssr122623	transcription start site region 122623	170 bp downstream