rs246330024 SNP Detail

Summary

• ID
  rs246330024
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:53532533 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    CCATTACTT Tggggtggag aaaagaaatc
  cctgggcttc tctgggccag ctaccttaga ccacttgaat ttctggccag agatagcccc
  tgtctcaaaa aagaaggtac atggctcttg aagaaggaca tctaagactg tcctcaggtc
  K
  tcacacacac acacacacac acacacatct gtacataccc aaacaaataT CCAATCTATT
  TCCCAAATGA CTCTACCAGT TTTGTAGTTA GAAACCATAG TCAATgtctc tctaccctct
  ccaggattta tcccttttaa aaagttttaa                                 
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss324341598	CHEV_13_53473866	CHEVERUD	SCREENING_POP	f	SNP	T	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs246330024					SNP	T	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:53532533 () rs orientation: forward

Symbol	Name	Function Class
Cpgi5620	CpG island 5620	918 bp distal
Rr403780	regulatory region 403780	894 bp downstream
Rr480032	regulatory region 480032	610 bp distal
Sptlc1	serine palmitoyltransferase, long chain base subunit 1	1132 bp upstream
Tssr122583	transcription start site region 122583	1124 bp upstream