rs246333925 SNP Detail

Summary

• ID
  rs246333925
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:90446273 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GAAAG AAGTAACCAC TTAAGCGTAC
  R
  GAGGTGAACC TGGGAGAGTG TGGTG                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320837957	CHEV_3_90342888	CHEVERUD	SCREENING_POP	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs246333925					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:90446273 () rs orientation: forward

Symbol	Name	Function Class
Rr580396	regulatory region 580396	1641 bp distal
Rr580397	regulatory region 580397	713 bp distal
Rr580398	regulatory region 580398	1881 bp proximal
S100a16	S100 calcium binding protein A16	within coordinates
Tssr30217	transcription start site region 30217	1725 bp downstream
Tssr30218	transcription start site region 30218	1696 bp downstream
Tssr30219	transcription start site region 30219	1662 bp downstream
Tssr30220	transcription start site region 30220	1640 bp downstream
Tssr30221	transcription start site region 30221	1580 bp downstream
Tssr30222	transcription start site region 30222	679 bp upstream
Tssr30223	transcription start site region 30223	709 bp upstream