rs246334057 SNP Detail

Summary

• ID
  rs246334057
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:58420722 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGGGTTTGAT GCCAAGCACT
  GTCCCTACGA ATTACAAAAT GAGAGGAAAA GGAATGGCCT GGTCTCCCTC ATCTTCTTGG
  CTGCTTGACT GTCATTTTGA CTTCTTAGAA CTTAAGGTTA CAGGGATCGA GGACCAACGG
  TCCTGAAACT TTTGCTTCCA ACACACTTAT CGAAAATGAC ATAAACTTAA AGGCATACCC
  S
  GAGCTCCACC ACCCCCCCCC ACCCCCCCCC CCCCCGCAAC ACACACACTG GTTAGGTGCA
  GCCTTCCTTT TCTAATCCGA AGCTCTCAAC TTCTGTGGGT TGTGAACTCT TAGAAACAAA
  AACAAAAAGC AAACTGCAGA CATGTACTAA GGAATTCAGT CATGAAGTGC AAAGGTGATT
  TTCACTTGCA CACAACGTCC                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/10SnJ	C57BR/cdJ	C57L/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZO/HlLtJ	NZW/LacJ	PL/J	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J
ss388759129	MGP_WTSI_13_58374269	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	C	G	G	C	G	G	G	G	C	G	G	G	G	G	G	G	G	G	G	G	G	G	G	C	G	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/10SnJ	C57BR/cdJ	C57L/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZO/HlLtJ	NZW/LacJ	PL/J	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J
rs246334057					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	C	G	G	C	G	G	G	G	C	G	G	G	G	G	G	G	G	G	G	G	G	G	G	C	G	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss388759129	MGP_WTSI_13_58374269	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:58420722 () rs orientation: forward

Symbol	Name	Function Class
Cpgi5724	CpG island 5724	443 bp proximal
Gkap1	G kinase anchoring protein 1	within coordinates
Rr276751	regulatory region 276751	922 bp distal
Rr281488	regulatory region 281488	78 bp proximal
Rr388493	regulatory region 388493	1506 bp downstream
Tssr120072	transcription start site region 120072	1344 bp upstream
Tssr122822	transcription start site region 122822	983 bp upstream
Tssr122823	transcription start site region 122823	1188 bp downstream
Tssr122824	transcription start site region 122824	1213 bp downstream
Tssr122825	transcription start site region 122825	1355 bp downstream
Tssr122826	transcription start site region 122826	1432 bp downstream
Tssr122827	transcription start site region 122827	1459 bp downstream
Tssr122828	transcription start site region 122828	1553 bp downstream
Tssr122829	transcription start site region 122829	1596 bp downstream
Tssr122830	transcription start site region 122830	1925 bp downstream