rs246348590 SNP Detail

Summary

• ID
  rs246348590
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:23989141 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TATTATTCTT GATGTTTATG
  AATGTTACAG ATGTAAGATA TTCAACTTTT TTTCTAGTAC TGGGGACTAA ACTGGAGGTA
  TCCTGCAAAC TAGAAAAGCA GTCTACTACT GAAATATATC TCTAGGTATT TATTATGTAG
  CTCAATGAAC TCATAATTGT CCCACCTAAG CCTCCCAAAA TATAAACAGT CTAAGTGTGC
  M
  CTGTACTGAG TTTGCTTATC AGTAAAGTGT TATATAAAAA CCACAGCATG GTAAGGAGTT
  TGAGCTAGCT CCAAAAACTT TGACTTTTTT CATTGTGTGT GTAACTCAGG AATTCATTCA
  CTCTATAAGC TATTGTTTAC TTAGAGCTTA CTGTCTTCTT CTATTCAGGC TTCTGTGAAC
  TACCACAGAA TGCCTCTGGA                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss324292021	CHEV_13_23897027	CHEVERUD	SCREENING_POP	f	SNP	C	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs246348590					SNP	C	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:23989141 () rs orientation: forward

Symbol	Name	Function Class
Gm11337	predicted gene 11337	518 bp upstream
Rr475952	regulatory region 475952	341 bp distal
Rr475953	regulatory region 475953	1445 bp proximal
Slc17a2	solute carrier family 17 (sodium phosphate), member 2	1835 bp upstream
Tssr118868	transcription start site region 118868	1828 bp upstream
Tssr118869	transcription start site region 118869	1871 bp upstream
Tssr118870	transcription start site region 118870	1907 bp upstream
Tssr118871	transcription start site region 118871	1937 bp upstream