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rs246356395 SNP Detail
Summary
  • ID
    rs246356395
  • Variation Type
    SNP
  • Alleles
    C/T
Genome Location and Flanking Sequence
  • Location
    Chr7:44130719 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                                CACTGTTTCT GCTTCTGTTT
CTCCTAATTA TTTCTACTCC GTCTCCTCTA TCCCTCCTCT CCTTTAACTG CTCTATCCCC
TCCCTTCCCT TTCACCCCTC CTTCTCTGTC TCCTCTATTC CTCCCTTTTT GCTTTCACCT
TCATCACCTT CATAATCCCC TCTTCTCCTT GAGCCCCTCT ATTGCCTCCT CTTCTGCTCC
Y
CCTCCTTCAT CTTTTTTATC CTTTCTCTTC TTCCTCTCAT TTATTTCAAC TATCCCCCTC
TTGCTTCTGT CTGATTCTCT CTTCCTGACT ACCTTCCTCT CCTCCTCCTC TATCTCCTCC
TCTGCTTCCT CTCCTCCAAC TCATTTTCTC CTTTCTTGTC TTCTTCTCTT CCCTCCTCTC
CTTAATCTCA TCTATCCCCC                                            

Y = C/T

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID		 Submitter
Handle		 Population
ss orientation
 Variation Type
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
ss371156158 MGP_WTSI_7_51736665 EVA_MGPV3 EVA_MGPV3 f SNP C C C C C C C C C C C C C C C C C C C T C C C C C C C C C C C C C T C C C C C C C C C C C C C C C C C C C
SNP Consensus Information
SNP Consensus Type
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs246356395 SNP C C C C C C C C C C C C C C C C C C C T C C C C C C C C C C C C C T C C C C C C C C C C C C C C C C C C C
Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter
Assay ID Submitter
SNP ID		 Submitter
Handle		 Population
ss orientation
 Variation
Type		 Alleles
ss371156158 MGP_WTSI_7_51736665 SC_MOUSE_GENOMES SC_MOUSE_GENOMES f SNP C/T
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr7:44130719 () rs orientation: forward
Symbol Name Transcript Protein Function
Class		 Allele Residue Codon
Position		 AA
Position
Rr646103 regulatory region 646103 1289 bp proximal
Rr646104 regulatory region 646104 1970 bp proximal
Tssr2228 transcription start site region 2228 1212 bp downstream
Tssr2229 transcription start site region 2229 937 bp downstream
Tssr2230 transcription start site region 2230 754 bp downstream
Tssr2231 transcription start site region 2231 627 bp downstream
Tssr2232 transcription start site region 2232 453 bp downstream
Tssr2233 transcription start site region 2233 408 bp downstream
Tssr2234 transcription start site region 2234 260 bp downstream
Tssr2235 transcription start site region 2235 372 bp upstream
Tssr66296 transcription start site region 66296 1889 bp downstream
Tssr66297 transcription start site region 66297 1865 bp downstream
Tssr66298 transcription start site region 66298 1810 bp downstream
Tssr66299 transcription start site region 66299 1790 bp downstream
Tssr66300 transcription start site region 66300 1767 bp downstream
Tssr66301 transcription start site region 66301 1751 bp downstream
Tssr66302 transcription start site region 66302 1710 bp downstream
Tssr66303 transcription start site region 66303 1701 bp downstream
Tssr66304 transcription start site region 66304 1696 bp downstream
Tssr66305 transcription start site region 66305 1657 bp downstream
Tssr66306 transcription start site region 66306 1603 bp downstream
Tssr66307 transcription start site region 66307 1554 bp downstream
Tssr66308 transcription start site region 66308 1537 bp downstream
Tssr66309 transcription start site region 66309 1487 bp downstream
Tssr66310 transcription start site region 66310 1418 bp downstream
Tssr66311 transcription start site region 66311 1395 bp downstream
Tssr66312 transcription start site region 66312 1376 bp downstream
Tssr66313 transcription start site region 66313 1366 bp downstream
Tssr66314 transcription start site region 66314 1348 bp downstream
Tssr66315 transcription start site region 66315 1341 bp downstream
Tssr66316 transcription start site region 66316 1276 bp downstream
Tssr66317 transcription start site region 66317 1260 bp downstream
Tssr66318 transcription start site region 66318 1219 bp downstream
Tssr66319 transcription start site region 66319 1191 bp downstream
Tssr66320 transcription start site region 66320 1167 bp downstream
Tssr66321 transcription start site region 66321 1143 bp downstream
Tssr66322 transcription start site region 66322 1127 bp downstream
Tssr66323 transcription start site region 66323 1089 bp downstream
Tssr66324 transcription start site region 66324 1036 bp downstream
Tssr66325 transcription start site region 66325 995 bp downstream
Tssr66326 transcription start site region 66326 985 bp downstream
Tssr66327 transcription start site region 66327 965 bp downstream
Tssr66328 transcription start site region 66328 947 bp downstream
Tssr66329 transcription start site region 66329 908 bp downstream
Tssr66330 transcription start site region 66330 895 bp downstream
Tssr66331 transcription start site region 66331 881 bp downstream
Tssr66332 transcription start site region 66332 848 bp downstream
Tssr66333 transcription start site region 66333 813 bp downstream
Tssr66334 transcription start site region 66334 807 bp downstream
Tssr66335 transcription start site region 66335 796 bp downstream
Tssr66336 transcription start site region 66336 782 bp downstream
Tssr66337 transcription start site region 66337 766 bp downstream
Tssr66338 transcription start site region 66338 682 bp downstream
Tssr66339 transcription start site region 66339 650 bp downstream
Tssr66340 transcription start site region 66340 583 bp downstream
Tssr66341 transcription start site region 66341 534 bp downstream
Tssr66342 transcription start site region 66342 505 bp downstream
Tssr66343 transcription start site region 66343 479 bp downstream
Tssr66344 transcription start site region 66344 322 bp downstream
Tssr66345 transcription start site region 66345 285 bp downstream
Tssr66346 transcription start site region 66346 213 bp downstream
Tssr66347 transcription start site region 66347 195 bp downstream
Tssr66348 transcription start site region 66348 150 bp downstream
Tssr66349 transcription start site region 66349 121 bp downstream
Tssr66350 transcription start site region 66350 116 bp downstream
Tssr66351 transcription start site region 66351 92 bp downstream
Tssr66352 transcription start site region 66352 2 bp downstream
Tssr66353 transcription start site region 66353 within coordinates
Tssr66354 transcription start site region 66354 13 bp upstream
Tssr66355 transcription start site region 66355 40 bp upstream
Tssr66356 transcription start site region 66356 57 bp upstream
Tssr66357 transcription start site region 66357 71 bp upstream
Tssr66358 transcription start site region 66358 83 bp upstream
Tssr66359 transcription start site region 66359 109 bp upstream
Tssr66360 transcription start site region 66360 121 bp upstream
Tssr66361 transcription start site region 66361 147 bp upstream
Tssr66362 transcription start site region 66362 179 bp upstream
Tssr66363 transcription start site region 66363 196 bp upstream
Tssr66364 transcription start site region 66364 229 bp upstream
Tssr66365 transcription start site region 66365 249 bp upstream
Tssr66366 transcription start site region 66366 269 bp upstream
Tssr66367 transcription start site region 66367 297 bp upstream
Tssr66368 transcription start site region 66368 319 bp upstream
Tssr66369 transcription start site region 66369 353 bp upstream
Tssr66370 transcription start site region 66370 395 bp upstream
Tssr66371 transcription start site region 66371 820 bp upstream
Tssr66372 transcription start site region 66372 983 bp upstream
Tssr66373 transcription start site region 66373 1273 bp upstream
Tssr66374 transcription start site region 66374 1331 bp upstream
Tssr66375 transcription start site region 66375 1342 bp upstream
Tssr66376 transcription start site region 66376 1355 bp upstream
Tssr66377 transcription start site region 66377 1394 bp upstream
Tssr66378 transcription start site region 66378 1416 bp upstream
Tssr66379 transcription start site region 66379 1428 bp upstream
Tssr66380 transcription start site region 66380 1461 bp upstream
Tssr66381 transcription start site region 66381 1480 bp upstream
Tssr66382 transcription start site region 66382 1504 bp upstream
Tssr66383 transcription start site region 66383 1614 bp upstream
Tssr66384 transcription start site region 66384 1712 bp upstream
Tssr72202 transcription start site region 72202 1487 bp upstream
Tssr72203 transcription start site region 72203 1107 bp upstream
Tssr72204 transcription start site region 72204 507 bp upstream
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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Send questions and comments to User Support. 		last database update
12/17/2024
MGI 6.24 		The Jackson Laboratory