rs246366803 SNP Detail

Summary

• ID
  rs246366803
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:89787659 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAAATATCTA TTGAAGAGCA
  AATTTCACAG AAATAATTTG CAGGTTTATC CAAAGCAATT GACTTCGACA TAATTATTAC
  GAGAATTTAT TGTAAACATA CTTAGAACAA TTTTATATTT TATCTAGAAA ATCTGTACAC
  CACAACCATG CTATAATTAG AGCAAAATGT TAATATTAAG TGAAATTGTT CTAATGTATT
  Y
  ATAAAAATCT TAATTCTATT GGTCCACATG AACCTATTAG TGTCGACCAC ATTCCTAGCA
  CTCTAAATAG TATCAGTGAC ACTTGAATGG AAGGAACATA GTCCAATTAT GAGCATCAGA
  GAACTGTATT TAATGCTTAG CCTTAGAATG AGATTCAATA ATGCTGAACT CTAGAGGCAA
  ATCTCATTCC TGTGCCTGAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ
ss404036117	MGP_WTSI_X_87989392	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C	C	T	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ
rs246366803					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C	C	T	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss404036117	MGP_WTSI_X_87989392	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:89787659 () rs orientation: forward

Symbol	Name	Function Class
Fth1-ps	ferritin heavy polypeptide 1, pseudogene	493 bp downstream
Tssr161463	transcription start site region 161463	605 bp upstream
Tssr161464	transcription start site region 161464	667 bp upstream
Tssr161465	transcription start site region 161465	682 bp upstream
Tssr161466	transcription start site region 161466	717 bp upstream
Tssr161467	transcription start site region 161467	804 bp upstream
Tssr161468	transcription start site region 161468	877 bp upstream
Tssr163758	transcription start site region 163758	632 bp downstream
Tssr163759	transcription start site region 163759	745 bp downstream
Tssr163760	transcription start site region 163760	916 bp downstream
Tssr163761	transcription start site region 163761	1178 bp downstream