rs246372294 SNP Detail

Summary

• ID
  rs246372294
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:111505263 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CGTGC GCCGAGGGAG CGAGGGGAGG
  K
  AGCCCGGGCG CGGCTTCGGC CGTGG                                      
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss324159947	CHEV_12_112777040	CHEVERUD	SCREENING_POP	f	SNP	G	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs246372294					SNP	G	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:111505263 () rs orientation: forward

Symbol	Name	Function Class
Cpgi5150	CpG island 5150	within coordinates
Eif5	eukaryotic translation initiation factor 5	within coordinates
Gm56546	predicted gene, 56546	594 bp upstream
Gm58608	predicted gene, 58608	within coordinates
Gm60631	predicted gene, 60631	195 bp upstream
Rr403512	regulatory region 403512	701 bp downstream
Rr473213	regulatory region 473213	37 bp distal
Rr473214	regulatory region 473214	77 bp distal
Rr473215	regulatory region 473215	within coordinates
Tssr115319	transcription start site region 115319	1624 bp downstream
Tssr115320	transcription start site region 115320	586 bp downstream
Tssr115321	transcription start site region 115321	551 bp downstream
Tssr115322	transcription start site region 115322	454 bp downstream
Tssr115323	transcription start site region 115323	347 bp downstream
Tssr115324	transcription start site region 115324	25 bp downstream
Tssr115325	transcription start site region 115325	within coordinates
Tssr115326	transcription start site region 115326	605 bp upstream
Tssr115327	transcription start site region 115327	1384 bp upstream
Tssr117828	transcription start site region 117828	873 bp upstream
Tssr117829	transcription start site region 117829	223 bp upstream