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rs246379347 SNP Detail
Summary
  • ID
    rs246379347
  • Variation Type
    SNP
  • Alleles
    C/G
Genome Location and Flanking Sequence
  • Location
    Chr2:156264496 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                          AAAAA CAAGATTACA GGGAAGTTTG
    S
    GGATTTAGTC ACTGTCTGCC GGGTT                                      
    
    S = C/G
    

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation Type
LG/J
SM/J
ss320579305 CHEV_2_156248312 CHEVERUD SCREENING_POP f SNP C G
SNP Consensus Information
SNP Consensus Type
LG/J
SM/J
rs246379347 SNP C G
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr2:156264496 () rs orientation: forward
Symbol Name Transcript Protein Function
Class
Allele Residue Codon
Position
AA
Position
Cpgi12548 CpG island 12548 594 bp distal
Epb41l1 erythrocyte membrane protein band 4.1 like 1 within coordinates
Rr55936 regulatory region 55936 within coordinates
Tssr21156 transcription start site region 21156 1825 bp downstream
Tssr21157 transcription start site region 21157 1714 bp downstream
Tssr21158 transcription start site region 21158 1533 bp downstream
Tssr21159 transcription start site region 21159 1511 bp downstream
Tssr21160 transcription start site region 21160 1500 bp downstream
Tssr21161 transcription start site region 21161 1462 bp downstream
Tssr21162 transcription start site region 21162 1453 bp downstream
Tssr21163 transcription start site region 21163 1433 bp downstream
Tssr21164 transcription start site region 21164 1402 bp downstream

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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last database update
12/17/2024
MGI 6.24
The Jackson Laboratory