About   Help   FAQ
rs246388352 SNP Detail
Summary
  • ID
    rs246388352
  • Variation Type
    SNP
  • Alleles
    A/G
Genome Location and Flanking Sequence
  • Location
    Chr7:44465646 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                                TTCAGGCCGG GGGTGGAGGG
    GTGGGGGGGT GGGGGAATAA GACAATGCGC ATGCGCAACA GGTTGTGGGG TTGTCTCCTT
    GGAGGAAAAG GGGCAGAGGG TCTGTGAATT AGCGCGCAGG CGCAACGGCG CGCGAGCCGA
    CCTTAAAAGC CCCCAAATTC TCCGGAAGCA CGCCCTCCTC CTCCCCGCCC CTCGCAACTC
    R
    AGCCTAGTGC GCTTGCTCAG CGGATGCGCC GGCCGCCAGC TTCCCTCTTC TGCGCCTGCG
    CGACCGTGGT TCCTCACTTC GTCTCCCCCG CCCCCACCAC GAGGCTGACC CGTGAAGCCC
    CGCGAGCTCT GAAAGGGCGG GAAAGGCAGT TGGCGAGGGA GGGGCGAGCG GTTACTCACT
    CCATGGCGGC GAAAAGGCGA                                            
    
    R = A/G
    

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation Type
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
ss371164299 MGP_WTSI_7_52071592 EVA_MGPV3 EVA_MGPV3 f SNP G G G G G G G G G G G G G G G G G G A G G G G G G G G G A A G G G G A A G G G G G G A G G G G G G G
SNP Consensus Information
SNP Consensus Type
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs246388352 SNP G G G G G G G G G G G G G G G G G G A G G G G G G G G G A A G G G G A A G G G G G G A G G G G G G G
Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation
Type
Alleles
ss371164299 MGP_WTSI_7_52071592 SC_MOUSE_GENOMES SC_MOUSE_GENOMES f SNP A/G
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr7:44465646 () rs orientation: forward
Symbol Name Transcript Protein Function
Class
Allele Residue Codon
Position
AA
Position
Atf5 activating transcription factor 5 within coordinates
Cpgi18994 CpG island 18994 within coordinates
Il4i1b interleukin 4 induced 1B 148 bp upstream
Nup62 nucleoporin 62 within coordinates
Rr400297 regulatory region 400297 149 bp downstream
Rr646219 regulatory region 646219 within coordinates
Rr646220 regulatory region 646220 185 bp proximal
Rr646221 regulatory region 646221 342 bp proximal
Tssr66426 transcription start site region 66426 282 bp downstream
Tssr66427 transcription start site region 66427 68 bp upstream
Tssr66428 transcription start site region 66428 101 bp upstream
Tssr66429 transcription start site region 66429 142 bp upstream
Tssr66430 transcription start site region 66430 164 bp upstream
Tssr72230 transcription start site region 72230 565 bp upstream
Tssr72231 transcription start site region 72231 540 bp upstream
Tssr72232 transcription start site region 72232 296 bp upstream
Tssr72233 transcription start site region 72233 364 bp downstream
Tssr72234 transcription start site region 72234 732 bp downstream

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
Warranty Disclaimer, Privacy Notice, Licensing, & Copyright
Send questions and comments to User Support.
last database update
12/17/2024
MGI 6.24
The Jackson Laboratory