rs246390852 SNP Detail

Summary

• ID
  rs246390852
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr9:96245166 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATAATACAAC CACTGGACTG
  GGATTAAAGG AGACTGGGCT CTTTTCTTGG CCCCATGGAA TATGTAATTT TACAAAGAAT
  CACAACCTCT GGGTTTCATT TCTGAACTAG AGGTTGGAAT TTAAGAAAAC AAAACAAAAC
  CCCCCAAACC TTCCATGGCT CCTTTCAGCT TGTGATAGAG TGTCAAAGAG CCTTGCACCC
  W
  AGAGGAGCTC ACTTCAGTGA ACAAGTCATT TTGTGAGCCA TATCTCACTT ATGGTCTTCA
  ATGCTTCTCT TAAAAATGCC ATGCCCCAAC GGCTCTCAGC TCTAAAAATC CATTCTTACT
  CAGAATGGAA AAAAAAAAAT CTGTCCTTAC CCATTAACAA AATACTCTTA AAAAAGGATT
  TCAAAAAGGT AAAATTGTCT                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss323108159	CHEV_9_96263532	CHEVERUD	SCREENING_POP	f	SNP	A	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs246390852					SNP	A	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:96245166 () rs orientation: forward

Symbol	Name	Function Class
Atp1b3	ATPase, Na+/K+ transporting, beta 3 polypeptide	Intron
Cpgi22162	CpG island 22162	390 bp proximal
Gm68867	predicted gene, 68867	within coordinates
Rr684945	regulatory region 684945	within coordinates
Rr684946	regulatory region 684946	1319 bp proximal
Tssr86601	transcription start site region 86601	811 bp upstream
Tssr90956	transcription start site region 90956	1186 bp downstream
Tssr90957	transcription start site region 90957	1294 bp downstream
Tssr90958	transcription start site region 90958	1318 bp downstream