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rs246393937 SNP Detail
Summary
  • ID
    rs246393937
  • Variation Type
    SNP
  • Alleles
    A/C
Genome Location and Flanking Sequence
  • Location
    Chr1:149982022 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                                AAAATGTATG AATATGTGAG
TGTTGTTACA AGATGAAAAA TGCTGCAGGT ATCAACACTG TTGGTTACAA CTGTGTCTTC
TTTACTATGA TAGGAGCATG TAATGTGGAA TTCTTCTTAA ATCTTGCATA TCTTTATCTC
ATCAAACAAA GGGGTCCAAG TTCAGTTTTA AATAAGCATT TAAGGCAGAT ACTGACAACA
M
TCTCATTTTT TAAAATGTTG TCTTGAGACA AATAATTTGA AATTTCTAAA TTGGGAGTTT
GAATCACTTT TGAAAGCTCT TACTTTCTTA AGCTGTCAGG TTTGTACCGA CATGGAGTAA
ACAGCTATCA TAAACGTAAA TCTCCAAAAC TAGTAGAAAT TATGTCATGA TTGATGGTTA
AGATACCATG TCAGGGATTG                                            

M = A/C

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID		 Submitter
Handle		 Population
ss orientation
 Variation Type
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
ss351888774 MGP_WTSI_1_151953401 EVA_MGPV3 EVA_MGPV3 f SNP A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A C A A A A
SNP Consensus Information
SNP Consensus Type
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs246393937 SNP A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A C A A A A
Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter
Assay ID Submitter
SNP ID		 Submitter
Handle		 Population
ss orientation
 Variation
Type		 Alleles
ss351888774 MGP_WTSI_1_151953401 SC_MOUSE_GENOMES SC_MOUSE_GENOMES f SNP A/C
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr1:149982022 () rs orientation: forward
Symbol Name Transcript Protein Function
Class		 Allele Residue Codon
Position		 AA
Position
Ptgs2 prostaglandin-endoperoxide synthase 2 within coordinates
Rr12935 regulatory region 12935 1622 bp distal
Rr24983 regulatory region 24983 1726 bp distal
Tssr9256 transcription start site region 9256 1984 bp downstream
Tssr9257 transcription start site region 9257 1950 bp downstream
Tssr9258 transcription start site region 9258 1934 bp downstream
Tssr9259 transcription start site region 9259 1877 bp downstream
Tssr9260 transcription start site region 9260 1825 bp downstream
Tssr9261 transcription start site region 9261 1806 bp downstream
Tssr9262 transcription start site region 9262 1785 bp downstream
Tssr9263 transcription start site region 9263 1773 bp downstream
Tssr9264 transcription start site region 9264 1724 bp downstream
Tssr9265 transcription start site region 9265 1697 bp downstream
Tssr9266 transcription start site region 9266 1608 bp downstream
Tssr9267 transcription start site region 9267 1273 bp downstream
Tssr9268 transcription start site region 9268 1203 bp downstream
Tssr9269 transcription start site region 9269 866 bp downstream
Tssr9270 transcription start site region 9270 835 bp downstream
Tssr9271 transcription start site region 9271 812 bp downstream
Tssr9272 transcription start site region 9272 781 bp downstream
Tssr9273 transcription start site region 9273 737 bp downstream
Tssr9274 transcription start site region 9274 717 bp downstream
Tssr9275 transcription start site region 9275 685 bp downstream
Tssr9276 transcription start site region 9276 671 bp downstream
Tssr9277 transcription start site region 9277 615 bp downstream
Tssr9278 transcription start site region 9278 594 bp downstream
Tssr9279 transcription start site region 9279 576 bp downstream
Tssr9280 transcription start site region 9280 476 bp downstream
Tssr9281 transcription start site region 9281 456 bp downstream
Tssr9282 transcription start site region 9282 422 bp downstream
Tssr9283 transcription start site region 9283 407 bp downstream
Tssr9284 transcription start site region 9284 395 bp downstream
Tssr9285 transcription start site region 9285 381 bp downstream
Tssr9286 transcription start site region 9286 302 bp downstream
Tssr9287 transcription start site region 9287 205 bp upstream
Tssr9288 transcription start site region 9288 321 bp upstream
Tssr9289 transcription start site region 9289 338 bp upstream
Tssr9290 transcription start site region 9290 494 bp upstream
Tssr9291 transcription start site region 9291 540 bp upstream
Tssr9292 transcription start site region 9292 659 bp upstream
Tssr9293 transcription start site region 9293 688 bp upstream
Tssr9294 transcription start site region 9294 708 bp upstream
Tssr9295 transcription start site region 9295 724 bp upstream
Tssr9296 transcription start site region 9296 746 bp upstream
Tssr9297 transcription start site region 9297 755 bp upstream
Tssr9298 transcription start site region 9298 781 bp upstream
Tssr9299 transcription start site region 9299 803 bp upstream
Tssr9300 transcription start site region 9300 820 bp upstream
Tssr9301 transcription start site region 9301 954 bp upstream
Tssr9302 transcription start site region 9302 984 bp upstream
Tssr9303 transcription start site region 9303 1046 bp upstream
Tssr9304 transcription start site region 9304 1070 bp upstream
Tssr9305 transcription start site region 9305 1088 bp upstream
Tssr9306 transcription start site region 9306 1100 bp upstream
Tssr9307 transcription start site region 9307 1104 bp upstream
Tssr9308 transcription start site region 9308 1137 bp upstream
Tssr9309 transcription start site region 9309 1151 bp upstream
Tssr9310 transcription start site region 9310 1182 bp upstream
Tssr9311 transcription start site region 9311 1194 bp upstream
Tssr9312 transcription start site region 9312 1219 bp upstream
Tssr9313 transcription start site region 9313 1239 bp upstream
Tssr9314 transcription start site region 9314 1250 bp upstream
Tssr9315 transcription start site region 9315 1344 bp upstream
Tssr9316 transcription start site region 9316 1527 bp upstream
Tssr9317 transcription start site region 9317 1804 bp upstream
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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Send questions and comments to User Support. 		last database update
12/17/2024
MGI 6.24 		The Jackson Laboratory