rs246396826 SNP Detail

Summary

• ID
  rs246396826
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:85428217 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAAGGTGACC CGTGGCCCCC
  AGCCCGGGAA GCGCGCACGC TGGATTCCCG CCCCGCCCGC CTGTCCGTCG CCGCTCACCG
  TGGGCCGCGA CGCACGTGGG CAGCCAGAGC ACGAGACAGC ACCAGCCCGC GGCGCCACGG
  CTCATCTCCA GGGCCCGTCC CGCCGCCGCC GCCGCCGCCG TCCCGCCGCG ATCCCTCGCC
  M
  GACTTTAGCC TGACAGCTGC CACGGCCTCC CTCAGGCCCG CTCTCCGCGC CGGTTGGAGC
  ACAGAACGGA GGCCAGCGGC TGATTGGCCG CCACGCCTGT TCGTGTGGCC GCACTTTCCT
  CCTCTGCGCC CTAGGCCACT TCCTATTGGC CAGGAGAAGT GGAACCGGGC GCTGATTGGC
  CAAAACTCTT AATAGCAACT                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss369068643	MGP_WTSI_6_85401229	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	A	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs246396826					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	A	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss369068643	MGP_WTSI_6_85401229	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:85428217 () rs orientation: forward

Symbol	Name	Function Class
Cct7	chaperonin containing TCP1 subunit 7	279 bp upstream
Cpgi17646	CpG island 17646	within coordinates
Pradc1	protease-associated domain containing 1	within coordinates
Rr633222	regulatory region 633222	1068 bp distal
Rr633223	regulatory region 633223	within coordinates
Rr633224	regulatory region 633224	3 bp proximal
Rr633225	regulatory region 633225	290 bp proximal
Rr633226	regulatory region 633226	725 bp proximal
Rr633227	regulatory region 633227	868 bp proximal
Tssr57418	transcription start site region 57418	253 bp upstream
Tssr57419	transcription start site region 57419	748 bp upstream
Tssr57420	transcription start site region 57420	770 bp upstream
Tssr57421	transcription start site region 57421	806 bp upstream
Tssr61752	transcription start site region 61752	within coordinates
Tssr61753	transcription start site region 61753	594 bp downstream
Tssr61754	transcription start site region 61754	628 bp downstream
Tssr61755	transcription start site region 61755	720 bp downstream