rs246402423 SNP Detail

Summary

• ID
  rs246402423
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:140429360 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGACAGACAG AGATCCCATT
  GTTCAAAATC AATAAAAAAA AAAAAAAAAA AAAAAAGCAG ACGGGGCGAG CGCCGGGCCG
  CGGGGGCCGG GCTGGGGCCC CACGAAAGTT CCTCTTTTCG CGCGTGCTCG CAGGTGCTTG
  GGGCCCGGCC GGGGTACAGG GGGGGGTCCC CGCGTGGCGC GCGGCGTGGG GAGGGGCGAG
  R
  GAGCAGCAGG TGGGGCGGCC CACGCCGCGC CGCGCGTCCC CTCCCCCGCC CCGCAGCCCG
  CCCCGTGTGC ATTGTGCGCC CCGTGTGTCT CCCGCAGCCC GGCGACCATG CCCAGGAAGA
  AGGGGGCGGC CTGGGAGGAG CCGAGTTCGG GCAACGGCAC GGCGCGCGCG GGGCCCCGGC
  GACGCGGCGG CCCCGCGGGC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ
ss363501334	MGP_WTSI_4_140257964	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ
rs246402423					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss363501334	MGP_WTSI_4_140257964	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:140429360 () rs orientation: forward

Symbol	Name	Function Class
Cpgi15195	CpG island 15195	within coordinates
Gm69527	predicted gene, 69527	779 bp upstream
Gm69529	predicted gene, 69529	1579 bp downstream
Rcc2	regulator of chromosome condensation 2	within coordinates
Rr377298	regulatory region 377298	325 bp downstream
Rr603518	regulatory region 603518	1498 bp distal
Rr603519	regulatory region 603519	790 bp distal
Rr603520	regulatory region 603520	566 bp distal
Rr603521	regulatory region 603521	618 bp distal
Tssr39974	transcription start site region 39974	1703 bp downstream
Tssr39975	transcription start site region 39975	1564 bp downstream
Tssr39976	transcription start site region 39976	1520 bp downstream
Tssr39977	transcription start site region 39977	1436 bp downstream
Tssr39978	transcription start site region 39978	612 bp downstream
Tssr39979	transcription start site region 39979	586 bp downstream
Tssr39980	transcription start site region 39980	540 bp downstream
Tssr39981	transcription start site region 39981	528 bp downstream
Tssr39982	transcription start site region 39982	501 bp downstream
Tssr39983	transcription start site region 39983	430 bp downstream
Tssr39984	transcription start site region 39984	210 bp downstream
Tssr39985	transcription start site region 39985	127 bp downstream
Tssr39986	transcription start site region 39986	87 bp downstream
Tssr39987	transcription start site region 39987	32 bp upstream
Tssr39988	transcription start site region 39988	128 bp upstream
Tssr39989	transcription start site region 39989	167 bp upstream
Tssr44273	transcription start site region 44273	960 bp upstream
Tssr44274	transcription start site region 44274	349 bp downstream
Tssr44275	transcription start site region 44275	1617 bp downstream