rs246403191 SNP Detail

Summary

• ID
  rs246403191
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:149983262 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    ATAATGATG ATCATTTTCT ACATCTCATT
  ATCAGCTGAG GTACTGTATA TTACTGAATT TATTGAAGAT AGTTATGTCT TTTAGACATT
  GTTGTTATAA ACTATGTTTA AGCCTACTAC AAGTGTTTCT TTTTGCATTA TGTTGGAATT
  R
  ATGTACCTTT TTTATGATTA CCTCTCTGAA CTATGGTGTG AACAATCAAA CAAAATGATG
  AGATTAACGT TCATGGATAA ATTCTAAGAA AACTAGTGTA TTTTTTTGAA AAGTTTGAAG
  TTAGAACTTA GGCTGTTGGA ATTTACGCAT                                 
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320045553	CHEV_1_151954641	CHEVERUD	SCREENING_POP	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs246403191					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:149983262 () rs orientation: forward

Symbol	Name	Function Class
Ptgs2	prostaglandin-endoperoxide synthase 2	within coordinates
Tssr9273	transcription start site region 9273	1977 bp downstream
Tssr9274	transcription start site region 9274	1957 bp downstream
Tssr9275	transcription start site region 9275	1925 bp downstream
Tssr9276	transcription start site region 9276	1911 bp downstream
Tssr9277	transcription start site region 9277	1855 bp downstream
Tssr9278	transcription start site region 9278	1834 bp downstream
Tssr9279	transcription start site region 9279	1816 bp downstream
Tssr9280	transcription start site region 9280	1716 bp downstream
Tssr9281	transcription start site region 9281	1696 bp downstream
Tssr9282	transcription start site region 9282	1662 bp downstream
Tssr9283	transcription start site region 9283	1647 bp downstream
Tssr9284	transcription start site region 9284	1635 bp downstream
Tssr9285	transcription start site region 9285	1621 bp downstream
Tssr9286	transcription start site region 9286	1542 bp downstream
Tssr9287	transcription start site region 9287	1026 bp downstream
Tssr9288	transcription start site region 9288	912 bp downstream
Tssr9289	transcription start site region 9289	895 bp downstream
Tssr9290	transcription start site region 9290	741 bp downstream
Tssr9291	transcription start site region 9291	693 bp downstream
Tssr9292	transcription start site region 9292	565 bp downstream
Tssr9293	transcription start site region 9293	549 bp downstream
Tssr9294	transcription start site region 9294	526 bp downstream
Tssr9295	transcription start site region 9295	499 bp downstream
Tssr9296	transcription start site region 9296	487 bp downstream
Tssr9297	transcription start site region 9297	474 bp downstream
Tssr9298	transcription start site region 9298	448 bp downstream
Tssr9299	transcription start site region 9299	430 bp downstream
Tssr9300	transcription start site region 9300	411 bp downstream
Tssr9301	transcription start site region 9301	278 bp downstream
Tssr9302	transcription start site region 9302	254 bp downstream
Tssr9303	transcription start site region 9303	178 bp downstream
Tssr9304	transcription start site region 9304	158 bp downstream
Tssr9305	transcription start site region 9305	149 bp downstream
Tssr9306	transcription start site region 9306	137 bp downstream
Tssr9307	transcription start site region 9307	111 bp downstream
Tssr9308	transcription start site region 9308	94 bp downstream
Tssr9309	transcription start site region 9309	72 bp downstream
Tssr9310	transcription start site region 9310	47 bp downstream
Tssr9311	transcription start site region 9311	24 bp downstream
Tssr9312	transcription start site region 9312	6 bp downstream
Tssr9313	transcription start site region 9313	within coordinates
Tssr9314	transcription start site region 9314	10 bp upstream
Tssr9315	transcription start site region 9315	104 bp upstream
Tssr9316	transcription start site region 9316	287 bp upstream
Tssr9317	transcription start site region 9317	564 bp upstream
Tssr9318	transcription start site region 9318	1293 bp upstream