rs246405408 SNP Detail

Summary

• ID
  rs246405408
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr14:59678306 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACTCAGAAAT CACCAGCCAC
  GAAAGTGAGC GCCGCAAGAC GGTGGGGGAA ACGCGACTGA GAGCCCCGGC CACCCCCGCT
  ACTGAGACAG CGGGTTGAGG CGGCCTGGCA CCCCGCGCGC CTTGCACTGT CCGCACCAGA
  GTCTGCAGTC CCGAGGCGGC TTCACCTCAG CGGGGGAGAC ATCAGCCCCA AGGGAGCTCC
  R
  CACAGTTTCC GCGGCCCCGC GGCGCCGGCC GGAGCGCGCG GCCTCCTGAT TGGTCGGCGA
  CTCTCTCGGT TTGTCTCGCG CGGACTGCTA CGGCCAATCG GGTTCTCGGC AGCCAAGTGA
  GGCACTTCGC TGGAGTGGTG GCGCAGCGCT CTCTGCCCGC GGTAGGTGTG TGGCTGCGGC
  GAGCCTTTTC CGGCTCTGGG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss391227476	MGP_WTSI_14_60059694	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs246405408					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss391227476	MGP_WTSI_14_60059694	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:59678306 () rs orientation: forward

Symbol	Name	Function Class
Cab39l	calcium binding protein 39-like	94 bp upstream
Cpgi6560	CpG island 6560	within coordinates
Gm45935	predicted gene, 45935	within coordinates
Rr404137	regulatory region 404137	within coordinates
Rr493048	regulatory region 493048	1949 bp distal
Rr493049	regulatory region 493049	within coordinates
Rr493050	regulatory region 493050	8 bp proximal
Rr493051	regulatory region 493051	135 bp proximal
Setdb2	SET domain, bifurcated 2	within coordinates
Tssr125903	transcription start site region 125903	275 bp downstream
Tssr125904	transcription start site region 125904	90 bp upstream
Tssr129008	transcription start site region 129008	within coordinates
Tssr129009	transcription start site region 129009	231 bp downstream
Tssr129010	transcription start site region 129010	246 bp downstream
Tssr129011	transcription start site region 129011	445 bp downstream
Tssr129012	transcription start site region 129012	452 bp downstream
Tssr129013	transcription start site region 129013	454 bp downstream