rs246409977 SNP Detail

Summary

• ID
  rs246409977
• Variation Type
  SNP
• Alleles
  C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:45866250 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGCAAGCCAG TGTGCAAGAC
  GCTCCCCATG GCCTCTGCAT CAGCTTCTCC CTCCAGGATC ATGTCCTGTT TCAGTTTTGT
  CCTGACTTCC TTTGATAATG GATTATGATC TTGAAGTATA AGCCGAATAA AACCTTCTCT
  CCCCAATTTG CTTTTTGGTC AGGGTATTTC ATTGCAGCAA TAGAAACGCT AAGACACCCC
  C
  CCACCACCAC CAACCTACAC AAACTCCCCA CAAAGTAGCC GGTTTATGCA GAAAAGTTTT
  TTAAAAATAC ACTTTTTAAA CAATTGAATG AATAAATGAA TGAAGACACC ACGGAACTAA
  AAAGAAGGAA CAAACAAATG CACGGAATTA GTGAATGAAA TAAAAGGGAA GGGGAAGAAT
  GAGTGAATGA ATGAATGGGC                                            
  
  C = C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss325403385	CHEV_17_45692273	CHEVERUD	SCREENING_POP	f	SNP	C	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs246409977					SNP	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:45866250 () rs orientation: forward

Symbol	Name	Function Class
Cpgi9193	CpG island 9193	251 bp proximal
Nfkbie	nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, epsilon	379 bp upstream
Rr405302	regulatory region 405302	148 bp upstream
Rr527427	regulatory region 527427	350 bp distal
Rr527428	regulatory region 527428	within coordinates
Rr527429	regulatory region 527429	1387 bp proximal
Tssr144787	transcription start site region 144787	312 bp upstream
Tssr144788	transcription start site region 144788	369 bp upstream
Tssr144789	transcription start site region 144789	403 bp upstream
Tssr144790	transcription start site region 144790	470 bp upstream
Tssr144791	transcription start site region 144791	481 bp upstream
Tssr144792	transcription start site region 144792	554 bp upstream
Tssr144793	transcription start site region 144793	935 bp upstream