rs246410728 SNP Detail

Summary

• ID
  rs246410728
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr7:83533215 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGCGCTGGGC GGCCACTGGG
  CCGAGGGCGT GGCTGGCTCT GTGGCGGCCG CGCGGAGTCA GTCGGGCGGG AGGCTGCAAC
  GCAGGGTGCT GGGCGGCCGC GCCTTCCCGC CTGGCGGTTC AGAGTGCGCG GCCCGGCGCC
  GCGGCGGCAC GCCCTCCCCT CCTGAATGGC CTGCGGCCGG CGACCGGCTG TCGTGGAGAT
  Y
  CCATCTGTGT TTCCCCGCAG AGCCCGCGGG CCCCGCGCAT CCGACGCCCC AGGGTGGTCG
  GCTCAGAAGG TGAGCGCGGC GTCGCGGAGG CCGACCCGGG CCCGGACTCC TGCCATGTTT
  GTCAACCAGC AACTTCCGAG CGACCTCCGA GCAACTGAAA GGAAGGGAGG AGACCGCAGG
  CCAGGGGACA CCCGCCTGCC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ
ss372126306	MGP_WTSI_7_91032517	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ
rs246410728					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss372126306	MGP_WTSI_7_91032517	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:83533215 () rs orientation: forward

Symbol	Name	Function Class
2310034P14Rik	RIKEN cDNA 2310034P14 gene	904 bp upstream
Mesd	mesoderm development LRP chaperone	Coding-Synonymous
Rr400419	regulatory region 400419	269 bp upstream
Rr650493	regulatory region 650493	226 bp distal
Rr650494	regulatory region 650494	216 bp proximal
Rr650495	regulatory region 650495	288 bp proximal
Rr650496	regulatory region 650496	1795 bp proximal
Tlnrd1	talin rod domain containing 1	mRNA-UTR
Tssr2320	transcription start site region 2320	1787 bp downstream
Tssr67581	transcription start site region 67581	362 bp downstream
Tssr67582	transcription start site region 67582	339 bp downstream
Tssr67583	transcription start site region 67583	267 bp downstream
Tssr67584	transcription start site region 67584	126 bp downstream
Tssr73402	transcription start site region 73402	537 bp upstream
Tssr73403	transcription start site region 73403	437 bp upstream
Tssr73404	transcription start site region 73404	177 bp upstream
Tssr73405	transcription start site region 73405	147 bp downstream
Tssr73406	transcription start site region 73406	206 bp downstream
Tssr73407	transcription start site region 73407	255 bp downstream
Tssr73408	transcription start site region 73408	282 bp downstream
Tssr73409	transcription start site region 73409	317 bp downstream